SDAV Publications

2017

[Lat2017a] Rob Latham, Matthieu Dorier, Robert Ross. “Get out of the way! Applying compression to internal data structures,” In Pdsw-discs 2016: 1st joint international workshop on parallel data storage & data intensive scalable computing systems, held in conjunction with SC2016, 2017.


[Wid2017a] W. Widanagamaachchi, A. Jacques, B. Wang, E. Crosman, P.-T. Bremer, V. Pascucci, J Horel. “Exploring the Evolution of Pressure-Perturbations to Understand Atmospheric Phenomena,” In IEEE Pacific Visualization Symposium (PacificVis) , 2017.


2016

[Bau2016a] Andrew C. Bauer, Hasan Abbasi, James Ahrens, Hank Childs, Berk Geveci, Scott Klasky, Kenneth Moreland, Patrick O'Leary, Venkatram Vishwanath, Brad Whitlock, E. Wes Bethel. “In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms,” In Computer Graphics Forum, Vol. 32, No. 3, pp. 577--597. June, 2016.
DOI: 10.1111/cgf.12930


[Ben2016a] Kevin Bensema, Luke J. Gosink, Harald Obermaier, Kenneth I. Joy. “Modality-Driven Classification and Visualization of Ensemble Variance,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 22, No. 10, 2016.


[Bha2016a] Harsh Bhatia, Attila G. Gyulassy, Valerio Pascucci, Martina Bremer, Mitchell T. Ong, Vincenzo Lordi, Erik W. Draeger, John E. Pask, & Peer-Timo Bremer. “Interactive Exploration of Atomic Trajectories Through Relative-Angle Distribution and Associated Uncertainties,” In 2016 IEEE Pacific Visualization Symposium (PacificVis), pp. 120-127. April, 2016.


[Bis2016a] Biswas, Ayan; Strelitz, Richard; Woodring, Jonathan; Chen, Chun-Ming; Shen, Han-Wei. “A Scalable Streamline Generation Algorithm Via Flux-Based Isocontour Extraction,” In Eurographics Symposium on Parallel Graphics and Visualization (EGPGV16), june, 2016.


[Boz2016a] Ebru Bozdag Daniel Peter Matthieu Lefebvre Dimitri Komatitsch Jeroen Tromp Judith Hill Norbert Podhorszki David Pugmire. “Global adjoint tomography: first-generation model,” In Geophysical Journal International, Vol. 207, No. 3, Oxford University Press, pp. 1739-1766. Dec, 2016.
DOI: 10.1093/gji/ggw356


[Bre2016a] P.-T. Bremer, A. Gruber, J. Bennett, A. Gyulassy, H. Kolla, J. Chen, R.W. Grout. “Identifying turbulent structures through topological segmentation,” In Com. in App. Math. and Comp. Sci., Vol. 11, No. 1, pp. 37-53. 2016.


[Bre2016b] P.-T. Bremer. “ADAPT - Adaptive Thresholds for Feature Extraction,” In Topology-Based Methods in Visualization, Springer, 2016.


[Car2016a] Hamish Carr, Gunther Weber, Christopher Sewell, James Ahrens. “Parallel Peak Pruning for Scalable SMP Contour Tree Computation,” In Proceedings of the IEEE Symposium on Large Data Analysis and Visualization (LDAV), Baltimore, Maryland, Note: Best Paper Award. The results reported in this paper stem from the PISTON / VTK-m work established by SDAV; ‎the specific work for this paper was funded under the ASCR XVIS project., October, 2016.


[Che2016a] Chen, Chun-Ming, Dutta, Soumya, liu, Xiaotong, Heinlein, Gregory, Shen, Han-Wei, Chen, Jen-Ping. “Visualization and Analysis of Rotating Stall for Transonic Jet Engine Simulation,” In IEEE SciVis 2015, also in IEEE Transactions on Visualization and Computer Graphics (TVCG), vol. 22, no. 1, 2016.


[Cho2016a] Jong Youl Choi, Tahsin Kurc, Jeremy Logan, Matthew Wolf, Eric Suchyta, James Kress, David Pugmire, Norbert Podhorszki, Eun-Kyu Byun, Mark Ainsworth, Manish Parashar, Scott Klasky. “Stream processing for near real-time scientific data analysis,” In Scientific Data Summit (NYSDS), IEEE Xplore, IEEE, pp. 1-8. August, 2016.
DOI: 10.1109/NYSDS.2016.7747804


[Dev2016a] Dharshi Devendran, Suren Byna, Bin Dong, Brian van Straalen, Hans Johansen, Noel Keen, Nagiza Samatova. “Collective I/O Optimizations for Adaptive Mesh Refinement Data Writes on Lustre File System,” In Cray User Group (CUG) , May, 2016.


[Don2016a] Bin Dong, Suren Byna, Kesheng Wu. “SDS-Sort: Scalable Dynamic Skew-aware Parallel Sorting,” In The ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC), July, 2016.


[Dut2016a] Dutta, Soumya, Shen, Han-Wei. “Distribution Driven Extraction and Tracking of Features for Time-varying Data Analysis,” In IEEE SciVIS 2015, also in IEEE Transactions on Visualization and Computer Graphics, vol. 22, no. 1, 2016.


[Han2016a] Dianwei Han, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. “A Novel Scalable DBSCAN Algorithm with Spark,” In the 5th International Workshop on Parallel and Distributed Computing for Large Scale Machine Learning and Big Data Analytics, held in conjunction with the International Parallel & Distributed Processing Symposium, Chicago, May, 2016.


[Hsu2016a] Chien-Hsin Hsueh, Jacqueline Chu, Kwan-Liu Ma, Joyce Ma, Jennifer Frazier. “Fostering Comparisons: Designing an Interactive Exhibit that Visualizes Marine Animal Behaviors,” In Proceedings of PacificVis 2016 (to appear), 2016.


[Kan2016a] Qiao Kang, Wei-keng Liao, Ankit Agrawal, Alok Choudhary. “A Filtering-based Clustering Algorithm for Improving Spatio-temporal Kriging Interpolation Accuracy,” In the 25th ACM International Conference on Information and Knowledge Management, Indianapolis, Indiana, October, 2016.


[Kre2016a] James Kress, Randy Michael Churchill, Scott Klasky, Mark Kim, Hank Childs, David Pugmire. “Preparing for In Situ Processing on Upcoming Leading-edge Supercomputers,” In Supercomputing Frontiers and Innovations, Vol. 3, No. 4, pp. 49-65. 2016.
DOI: 10.14529/jsfi160404


[Kre2016b] James Kress David Pugmire Scott Klasky Hank Childs. “Visualization and analysis requirements for in situ processing for a large-scale fusion simulation code,” In ISAV '16 Proceedings of the 2nd Workshop on In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization, pp. 45-50. 2016.
DOI: 10.1109/ISAV.2016.14


[Lar2016a] Larsen, Matthew, Harrison, Cyrus, Kress, James, Pugmire, David, Meredith, Jeremy S., Childs, Hank. “Performance Modeling of In Situ Rendering,” In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC16), Salt Lake City, Utah, pp. 24:1--24:12. Nov, 2016.
ISBN: 978-1-4673-8815-3


[Lar2016b] Matthew Larsen, Kenneth Moreland, Chris R. Johnson, Hank Childs. “Optimizing Multi-Image Sort-Last Parallel Rendering,” In Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV), Baltimore, MD pp. 37--46. Oct, 2016.


[Lee2016a] Sunwoo Lee, Wei-keng Liao, Ankit Agrawal, Nikos Hardavellas, Alok Choudhary. “Evaluation of K-Means Data Clustering Algorithm on Intel Xeon Phi,” In the Workshop on Advances in Software and Hardware for Big Data to Knowledge Disc overy, held in conjunction with the IEEE Bigdata Conference, Washington, D.C., December, 2016.


[Liu2016a] Liu, Xiaotong, Shen, Han-Wei. “Association Analysis for Visual Exploration of Multivariate Scientific Data Sets,” In IEEE SciVis 2015, also in IEEE Transactions on Visualization and Computer Graphics (TVCG), vol. 22, no. 1, 2016.


[Liu2016b] S. Liu, P.-T. Bremer, J. Thiagarajan, B. Wang, B. Summa, V. Pascucci. “Grassmannian Atlas: A General Framework for Exploring Linear Projections of High-Dimensional Data. Shusen Liu,” In Comput. Graph. Forum, 2016.


[Mal2016a] Dan Maljovec, Bei Wang, Paul Rosen, Andrea Alfonsi, Giovanni Pastore, Cristian Rabiti, Valerio Pascucci. “Rethinking Sensitivity Analysis of Nuclear Simulations with Topology,” In IEEE Pacific Visualization Symposium (PacificVis), pp. 64-71. April, 2016.
DOI: 10.1109/PACIFICVIS.2016.7465252


[Moo2016a] Changsung Moon, Dakota Medd, Paul Jones, Steve Harenberg, William Oxbury, Nagiza F. Samatova. “Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models,” In SIAM International Conference on Data Mining (SDM), May, 2016.


[Mor2016a] Kenneth Moreland. “The Tensions of In Situ Visualization,” In IEEE Computer Graphics and Applications, Vol. 36, No. 2, pp. 5-9. March/April, 2016.
DOI: 10.1109/MCG.2016.35


[Mor2016b] Kenneth Moreland, Christopher Sewell, William Usher, Li-ta Lo, Jeremy Meredith, David Pugmire, James Kress, Hendrik Schroots, Kwan-Liu Ma, Hank Childs, Matthew Larsen, Chun-Ming Chen, Robert Maynard, Berk Geveci. “VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures,” In IEEE Computer Graphics and Applications, Vol. 36, No. 3, pp. 48--58. May/June, 2016.
DOI: 10.1109/MCG.2016.48


[Mor2016c] Kenneth Moreland. “Why We Use Bad Color Maps and What You Can Do About It,” In Proceedings of Human Vision and Electronic Imaging (HVEI), February, 2016.
DOI: 10.2352/ISSN.2470-1173.2016.16.HVEI-133


[Mue2016a] Chris Muelder, Biao Zhu, Wei Chen, Hongxin Zhang, Kwan-Liu Ma. “Visual Analysis of Cloud Computing Performance Using Behavioral Lines,” In Proceedings of PacificVis 2016 (to appear), 2016.


[Neu2016a] Tyson Neuroth, Franz Sauer, Weixing Wang, Stephane Ethier, Choong-Seock Chang,, Kwan-Liu Ma. “Scalable Visualization of Time-varying Multi-parameter Distributions Using Spatially Organized Histograms,” In IEEE Transactions on Visualization and Computer Graphics, Vol. PP, No. 99, 2016.


[Obe2016a] Harald Obermaier, Kevin Bensema, Kenneth I. Joy. “Visual Trends Analysis in Time-Varying Ensembles,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 22, No. 10, 2016.


[Pal2016a] Diana Palsetia, William Hendrix, Sunwoo Lee, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. “Parallel Community Detection Algorithm Using a Data Partitioning Strategy with Pairwise Subdomain Duplication,” In the 31st International Supercomputing Conference, Frankfurt, Germany, June, 2016.


[Per2016a] Paris Perdikaris, Joseph A. Insley, Leopold Grinberg, Yue Yu, Michael E. Papka, George Em. Karniadakis. “Visualizing Multiphysics, Fluid-Structure Interaction Phenomena in Intracranial Aneurysms,” In Parallel Computing journal, Vol. 55, pp. 9-16. July, 2016.
DOI: 10.1016/j.parco.2015.10.016


[Pre2016a] Annie Preston, Ramyar Ghods, Jinrong Xie, Franz Sauer, Nick Leaf, Kwan-Liu Ma, Esteban Rangel, Eve Kovacs, Katrin Heitmann, Salman Habib. “An Integrated Visualization System for Interactive Analysis of Large, Heterogeneous Cosmology Data,” In Proceedings of PacificVis 2016 (to appear), 2016.


[Pug2016a] David Pugmire; James Kress; Hank Childs; Matthew Wolf; Greg Eisenhauer; Randy Churchill; Tahsin Kurc; Jong Choi; Scott Klasky; Kesheng Wu; Alex Sim; Junmin Gu. “Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows,” In High Performance Data Analysis and Visualization (HPDAV) 2016 held in conjuction with IPDPS 2016, Chicago, May, 2016.


[Pug2016b] Roberto Sisneros, David Pugmire. “Tuned to Terrible: A Study of Parallel Particle Advection State of the Practice.,” In High Performance Data Analysis and Visualization (HPDAV) 2016 held in conjuction with IPDPS 2016, Chicago, May, 2016.


[Pug2016c] Dave Pugmire, Jeremy Meredith, Scott Klasky, Jong Choi, Norbert Podhorszki, James Kress, Hank Childs. “Visualization Plugins using VTKm for In-Transit Visualization with ADIOS,” In Supercomputing Frontiers 2016, Singapore, March, 2016.


[Ran2016a] Stephen Ranshous, Steve Harenberg, Kshitij Sharma, Nagiza F. Samatova. “A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations,” In SIAM International Conference on Data Mining (SDM), May, 2016.


[Ran2016b] Esteban Rangel, Wei-keng Liao, Ankit Agrawal, Alok Choudhary, William Hendrix. “AGORAS: A Fast Algorithm for Estimating Medoids in Large Datasets,” In the Workshop on Computational Optimization, Modeling & Simulation, held in conjunction with the International Conference on Computational Science, San Diego, June, 2016.


[Ran2016c] Esteban Rangel, Nan Li, Salman Habib, Tom Peterka, Ankit Agrawal, Wei-Keng Liao, Alok Choudhary. “Parallel DTFE Surface Density Field Reconstruction,” In the IEEE International Conference on Cluster Computing, Taipei, Taiwan, Note: Best paper award, September, 2016.


[Riz2016a] Silvio Rizzi, Mark Hereld, Joseph A. Insley, Preeti Malakar, Michael E. Papka, Thomas Uram, Venkatram Vishwanath. “Coupling LAMMPS and the vl3 Framework for Co-Visualization of Atomistic Simulations,” In High Performance Data Analysis and Visualization (HPDAV) 2016, May, 2016.


[Rom2016a] Melissa Romanus, Fan Zhang, Tong Jin, Qian Sun, Hoang Bui, Ivan Rodero, Jong Choi, Salomon Janhunen, Robert Hager, Scott Klasky, Choong-Seock Chang, Manish Parashar. “Persistent Data Staging Services for Data Intensive In-Situ Scientific Workflows,” In The 7th International Workshop on Data-intensive Distributed Computing in conjunction with the 25th International ACM Symposium on High Performance Parallel and Distributed Computing(HPDC'16), Kyoto, Japan, Note: To Appear In, June, 2016.


[Rub2016a] Oliver Ruebel, Burlen Loring, Jean-Luc Vay, David P. Grote, Remi Lehe, Stepan Bulanov, Henri Vincenti,, E. Wes Bethel. “WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations,” In IEEE Computer Graphics and Applications, Vol. 36, No. 3, pp. 22-35. may, 2016.
ISSN: 0272-1716
DOI: 10.1109/MCG.2016.62


[Rud2016a] U. Rüde, K. Willcox, L. C. McInnes, H. De Sterck, G. Biros, H. Bungartz, J. Corones, E. Cramer, J. Crowley, O. Ghattas, M. Gunzburger, M. Hanke, R. Harrison, M. Heroux, J. Hesthaven, P. Jimack, C. Johnson, K. E. Jordan, D. E. Keyes, R. Krause, V. Kumar, S. Mayer, J. Meza, K. M. Mørken, J. T. Oden, L. Petzold, P. Raghavan, S. M. Shontz, A. Trefethen, P. Turner, V. Voevodin, B. Wohlmuth, C. S. Woodward. “Research and Education in Computational Science and Engineering,” Subtitled “Report from a workshop sponsored by the Society for Industrial and Applied Mathematics (SIAM) and the European Exascale Software Initiative (EESI-2),” Aug, 2016.


[Sau2016a] Franz Sauer, Yubo Zhang, Weixing Wang, Stephane Ethier, Kwan-Liu Ma. “Visualization Techniques for Studying Large-Scale Flow Fields from Fusion Simulations,” In Computer Science and Engineering, Vol. 18, No. 2, IEEE, pp. 68-77. March, 2016.
DOI: 10.1109/MCSE.2015.107


[Shi2016a] Min Shih, Silvio Rizzi, Joseph Insley, Thomas Uram, Venkat Vishwanath, Mark Hereld, Michael E. Papka, Kwan-Liu Ma. “Parallel Distributed, GPU-Accelerated, Advanced Lighting Calculations for Large-Scale Volume Visualization,” In IEEE Symposium on Large Data Analysis and Visualization (LDAV) 2016, Note: Best Paper Honorable Mention Award, October, 2016.


[Skr2016a] Primoz Skraba, Paul Rosen, Bei Wang, Guoning Chen, Harsh Bhatia, Valerio Pascucci. “Critical Point Cancellation in 3D Vector Fields: Robustness and Discussion,” In IEEE Transactions on Visualization & Computer Graphics. Also Best Paper at PacificVis, April, 2016.


[Sny2016a] Shane Snyder, Philip Carns, Kevin Harms, Robert Ross, Glenn K. Lockwood, Nicholas J. Wright. “Modular HPC I/O Characterization with Darshan,” In Proceedings of 5th Workshop on Extreme-scale Programming Tools (ESPT 2016), 11, 2016.


[Ste2016a] H. De Sterck, C. Johnson,, L. C. McInnes. “Special Section on Two Themes: CSE Software and Big Data in CSE,” In SIAM J. Sci. Comput, Vol. 38, No. 5, SIAM, pp. S1--S2. 2016.


[Sun2016a] Qian Sun, Melissa Romanus, Tong Jin, Hongfeng Yu, Peer-Timo Bremer, Steve Petruzza, Scott Klasky, Manish Parashar. “In-Staging Data Placement for Asynchronous Coupling of Task-Based Scientific Workflows,” In The 2nd International Workshop on Extreme Scale Programming Models and Middleware(ESPM2'16) in conjunction with The International Conference on High Performance Computing, Networking, Storage and Analysis, Utah, USA, Note: Best paper award, Nov, 2016.


[Tan2016a] Houjun Tang, Suren Byna, Steven Harenberg, Xiaocheng Zou, Wenzhao Zhang, Kesheng Wu, Bin Dong, Oliver Rubel, Kristofer Bouchard, Scott Klasky, Nagiza Samatova. “Usage Pattern-Driven Dynamic Data Layout Reorganization,” In 16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), May, 2016.


[Ton2016a] X. Tong, J. Edwards, C. Chen, H. Shen, C. R. Johnson, P. Wong. “View-Dependent Streamline Deformation and Exploration,” In Transactions on Visualization and Computer Graphics, Vol. 22, No. 7, IEEE, pp. 1788--1801. July, 2016.


[Wid2016a] Wathsala Widanagamaachchi, Yarden Livnat, Peer-Timo Bremer, Scott Duvall, Valerio Pascucci. “Interactive Visualization and Exploration of Patient Progression in a Hospital Setting,” In Proceedings of the 2016 Workshop on Visual Analytics in Healthcare, 2016.


[Yua2016a] Zheng Yuan, William Hendrix, Seung Woo Son, Christoph Federrath, An kit Agrawal, Wei-keng Liao, Alok Choudhary. “Parallel Implementation of Lossy Data Compression for Temporal Data Sets,” In the 23rd International Conference on High Performance Computing, Hyderabad, India, December, 2016.


[Zaw2016a] Dawid Zawislak, William Allcock, Joseph Insley, Michael E. Papka, Silvio Rizzi, Brian Toonen. “Early Investigations Into Using a Remote RAM Pool with the vl3 Visualization Framework,” In In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV) 2016, Salt Lake City, UT, November, 2016.


[Zha2016a] Wenzhao Zhang, Houjun Tang, Steven Harenberg, Suren Byna, Xiaocheng Zou, Dharshi Devendran, Daniel Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza Samatova. “AMRZone: A Runtime AMR Data Sharing Framework For Scientific Applications,” In 16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), May, 2016.


[Zha2016b] Yubo Zhang, Kwan-Liu Ma. “Decoupled Shading for Real-time Heterogeneous Volume Illumination,” In Proceedings of EuroVis 2016 (to appear), 2016.


[Zou2016a] Xiaocheng Zou, David Boyuka, Dhara Desai, Daniel Martin, Suren Byna, Kesheng Wu, Kushal Bansal, Bin Dong, Wenzhao Zhang, Houjun Tang, Dharshi Devendran, David Trebotich, Scott Klasky, Hans Johansen, Nagiza Samatova. “AMR-aware In Situ Indexing and Scalable Querying,” In The 24th High Performance Computing Symposium (HPC), April, 2016.


2015

[Agr2015a] Alexy Agranovsky, David Camp Kenneth I. Joy,, Hank Chids. “Subsampling-based Compression and Flow Visualizaiton,” In SPIE, Visual Data Analysis Conference, San Francisco CA, February, 2015.


[Arg2015b] Alexy Agranovsky, Harald Obermaier, Christoph Garth, Kenneth I. Joy. “A Multi-resolution Interpolation Scheme for Pathline-based Lagrangian Flow Representations,” In SPIE, Visual Data Analysis Conference, San Francisco CA, February, 2015.


[Aya2015a] Utkarsh Ayachit, Andrew Bauer, Berk Geveci, Patrick O'Leary, Kenneth Moreland, Nathan Fabian, Jeffrey Mauldin. “ParaView Catalyst: Enabling In Situ Data Analysis and Visualization,” In Proceedings of the First Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization (ISAV 2015), pp. 25-29. November, 2015.
DOI: 10.1145/2828612.2828624


[Beh2015a] Babak Behzad, Suren Byna, Stefan Wild, Prabhat, Marc Snir. “Dynamic Model-driven Parallel I/O Performance Tuning,” In IEEE Cluster 2015, Chicago, https://sdm.lbl.gov/~sbyna/research/papers/201509-Cluster-Autotune.pdf, September, 2015.


[Ben2015a] J. Bennett, F. Vivodtzev,, V. Pascucci. “Topological and statistical methods for complex data. Mathematics and Visualization,” In Topological and statistical methods for complex data. Mathematics and Visualization, Springer, May, 2015.


[Bet2015a] E. Wes Bethel, David Camp, David Donofrio, Mark Howison. “Improving Performance of Structured-memory, Data-Intensive Applications on Multi-core Platforms via a Space-Filling Curve Memory Layout,” In International Workshop on High Performance Data Intensive Computing, and IEEE International Parallel and Distributed Processing Symposium (IPDPS) workshop, Hyderabad, India May, 2015.


[Bha2015a] Harsh Bhatia, Bei Wang, Gregory Norgard, Valerio Pascucci, Peer-Timo Bremer. “Local, Smooth, and Consistent Jacobi Set Simplification,” In Computational Geometry: Theory and Applications (CGTA), 48(4), pp. 311-332. May, 2015.


[Bis2015a] Ayan Biswas, Wenbin He, Qi Deng, Chun-Ming Chen, Han-Wei Shen, Raghu Machiraju, Anand Rangarajan. “An Uncertainty-Driven Approach to Vortex Analysis Using Oracle Consensus and Spatial Proximity,” In IEEE Pacific Vis, Hangzhou, China, April, 2015.


[Boy2015a] Drew A. Boyuka, Xiaocheng Zou, Nagiza Samatova, Junmin Gu, Kesheng Wu, Norbert Podhorszki, Scott Klasky. “ADIOS Query Interface Design ,” In Supercomputing Frontiers, June, 2015.


[Boy2015b] David A. Boyuka II, Houjun Tang, Kushal Bansal, Xiaocheng Zou, Scott Klasky, Nagiza F. Samatova. “The Hyperdyadic Index and Generalized Indexing and Query with PIQUE,” In International Conference on Scientific And Statistical Database Management (SSDBM), June, 2015.


[Bre2015a] Peer-Timo Bremer, Dan Maljovec, Avishek Saha, Bei Wang, Jim Gaffney, Brian K. Spears, Valerio Pascucci. “ND2AV: N-Dimensional Data Analysis and Visualization - Analysis for the National Ignition Campaign,” In Computing and Visualization in Science, February, 2015.


[Bui2015a] Huy Bui, Robert Jacob, Preeti Malakar, Venkatram Vishwanath , Andrew Johnson, Michael Papka,, Jason Leigh. “Multipath Load Balancing for M × N Communication Patterns on the Blue Gene/Q Supercomputer Interconnection Network,” In 1st IEEE International Workshop on High-Performance Interconnection Networks Towards the Exascale and Big-Data Era, co-located with IEEE Cluster, Chicago, IL, USA, September, 2015.


[Buj2015a] Roxana Bujack, Jens Kasten, Vijay Natarajan, Gerik Scheuermann, Kenneth I. Joy. “Clustering Moment Invariants to Identify Similarity within 2D Flow Fields,” In Eurographics Conference on Visualization (EuroVis) - short paper, May, 2015.


[Buj2015b] Roxana Bujack, Kenneth Joy. “Lagrangian Representations of Flow Fields with Parameter Curves,” In IEEE Symposium on Large Data Analysis and Visualization (LDAV), October, 2015.


[Bus2015a] Michael Bussmann, Axel Huebl, René Widera, Felix Schmitt, Sebastian Grottel, Norbert Podhorszki, Dave Pugmire, Scott Klasky. “Breaking the Simulation/Analysis Chain,” In Supercomputing Frontiers, March, 2015.


[Byn2015a] Suren Byna, Robert Sisneros, Kalyana Chadalavada, Quincey Koziol. “Tuning Parallel I/O on Blue Waters for Writing 10 Trillion Particles,” In Cray User Group (CUG) meeting, 2015.


[Car2015a] Hamish Carr, Zhao Geng, Julien Tierny, Amit Chattopadhyay, Aaron Knoll. “Fiber Surfaces: Generalizing Isosurfaces to Bivariate Data,” In Computer Graphics Forum, proc. Eurovis, May, 2015.


[Cha2015a] Abon Chaudhuri, Teng-Yok Lee, Han-Wei Shen, Rephael Wenger. “Exploring Flow Fields Using Space-filling Analysis of Streamlines,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), January, 2015.


[Cha2015b] Jennifer Chandler, Harald Obermaier, Kenneth I. Joy. “Interpolation-Based Pathline Tracing in Particle-Based Flow Visualization,” In IEEE Transactions on Visualization and Computer Graphics, Vol 21, No. 1, January, 2015.


[Cha2015c] Jennifer Chandler, Harald Obermaier,, Kenneth I. Joy. “WebGL-Enabled Remote Visualization of Smoothed Particle Hydrodynamics Simulations,” In Eurographics Conference on Visualization (EuroVis) - short paper, May, 2015.


[Che2015a] Chun-Ming Chen, Ayan Biswas, Han-Wei Shen. “Uncertainty Modeling and Error Reduction for Pathline Computation in Time-varying Flow Fields,” In IEEE Pacific Vis 2015, Hangzhou, China, April, 2015.


[Che2015b] Chun-Ming Chen, Soumya Dutta, Xiaotong Liu, Gregory Heinlein, Han-Wei Shen, Jen-Ping Chen. “Visualization and Analysis of Rotating Stall for Transonic Jet Engine Simulation,” In IEEE Scientific Visualization (SciVis), October, 2015.


[Cho2015a] Jong Choi, Yuan Tian, Gary Liu, Norbert Podhorszki, David Pugmire, Scott Klasky, Eun-Kyu Byun, Soonwook Hwang, Alex Sim, Lingfei Wu, John Wu, Mehmet Aktas, Manish Parashar, Michael Churchill, C.S. Chang, Tahsin Kurc, Xinyan Yan, Matthew Wolf,. “ICEE: Enabling Data Stream Processing For Remote Data Analysis Over Wide Area Networks,” In Supercomputing Frontiers, March, 2015.


[Day2015a] Jai Dayal, Jay Lofstead, Greg Eisenhauer, Karsten Schwan, Matthew Wolf,Hasan Abbasi, Scott Klasky. “SODA: Science-driven Orchestration of Data Analytics,” In The 11th International Conference on eScience, September, 2015.


[Dee2015a] Ewa Deelman, Tom Peterka, others. “The Future of Scientific Workflows: Report of the DOE NGNS/CS Scientific Workflows Workshop,” April, 2015.


[Don2015a] Bin Dong, Suren Byna, Kesheng Wu. “Spatially Clustered Join on Heterogeneous Scientific Data Sets,” In 2015 IEEE International Conference on Big Data (IEEE BigData), 2015.


[Dut2015a] Soumya Dutta, Han-Wei Shen. “Distribution Driven Extraction and Tracking of Features for Time-varying Data Analysis,” In IEEE Scientific Visualization (SciVis), October, 2015.


[Edw2015a] J. Edwards, E. Daniel, V. Pascucci,, C. Bajaj. “The Generalized Voronoi Diagram of Closely-Spaced Objects,” In Computer Graphics Forum, June, 2015.


[Gon2015a] Gonzalo A. Bello, Michael Angus, Navya Pedemane, Jitendra K. Harlalka, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova. “Response-Guided Community Detection: Application to Climate Index Discovery,” In Machine Learning and Knowledge Discovery in Databases: European Conference, ECML PKDD, September, 2015.


[Gra2015a] Lucio Grandinetti, Gerhard Joubert, Marcel Kunze, Valerio Pascucci. “Big Data and High Performance Computing,” In Big Data and High Performance Computing, IOS Press, October, 2015.


[Gro2015a] Pascal Grosset, Manasa Prasad, Cameron Christensen, Aaron Knoll, Charles D. Hansen. “TOD-Tree: Task-Overlapped Direct send Tree Image Compositing for Hybrid MPI Parallelism,” In Eurographics Parallel Graphics and Visualization (EGPGV), May, 2015.


[Gyu2015a] Attila Gyulassy, Aaron Knoll, Kah Chun Lau, Bei Wang, Peer-Timo Bremer, Valerio Pasucci, Michael E. Papka, Larry Curtiss. “Morse-Smale Analysis of Ion Diffusion in Ab Initio Battery Materials Simulations,” In Topology-Based Methods in Visualization (TopoInVis), June, 2015.


[Gyu2015b] Gyulassy, A.; Knoll, A.; Lau, K.; Wang, B.; Bremer, P.; Papka, M.; Curtiss, L.; Pascucci, V.. “Interstitial and Interlayer Ion Diffusion Geometry Extraction in Graphitic Nanosphere Battery Materials,” In IEEE Transactions on Visualization and Computer Graphics, August, 2015.
DOI: 10.1109/TVCG.2015.2467432


[Hab2015a] Salman Habib, Adrian Pope, Hal Finkel, Nicholas Frontiere, Katrin Heitmann, David Daniel, Patricia Fasel, Vitali Morozov, George Zagaris, Tom Peterka, Venkatram Vishwanath, Zarija Lukic, Saba Sehrish, Wei-keng Liao. “HACC: Simulating Sky Surveys on State-of-the-Art Supercomputing Architectures,” In New Astronomy, Vol. 42, pp. 49-65. July, 2015.
DOI: 10.1016/j.newast.2015.06.003


[Hei2015a] Katrin Heitmann, Nicholas Frontiere, Chris Sewell, Salman Habib, Adrian Pope, Hal Finkel, Silvio Rizzi, Joe Insley, Suman Bhattacharya. “The Q Continuum Simulation: Harnessing the Power of GPU Accelerated Supercomputers,” In Astrophysical Journal Supplement Series, Vol. 219, No. 34, August, 2015.


[Hua2015a] Dan Huang, Jiangling Yin, Jun Wang, Xuhong Zhang, Jian Zhou, Qing Liu. “SideIO: A Side I/O Framework System for Eliminating Analysis Data Migration,” In Supercomputing Frontiers, March, 2015.


[Jia2015a] Jie Jiang, Mark Hereld, Joseph A. Insley, Michael E. Papka, Silvio Rizzi, Thomas Uram, Venkatram Vishwanath. “Streaming Ultra High Resolution Images to Large Tiled Display at Nearly Interactive Frame Rates with vl3,” In IEEE Symposium on Large Data Analysis and Visualization (LDAV) - poster, Note: Best Poster Award, October, 2015.


[Jin2015a] Ye Jin, Xiaosong Ma, Gary Liu, Mingliang Liu, Jeremy Logan, Norbert Podhorszki, Jong Youl Choi,, Scott Klasky. “Combining Phase Identification and Statistical Modeling for Automated Parallel Benchmark Generation,” In ACM SIGMETRICS, June, 2015.


[Jin2015b] Ye Jin, Mingliang Liu, Xiaosong Ma, Gary Liu, Jeremy S. Logan, Norbert Podhorszki, Jong Youl Choi,, Scott Klasky. “Combining Phase Identification and Statistic Modeling for Automated Parallel Benchmark Generation,” In PPoPP, accepted as a poster, February, 2015.


[Jin2015c] Tong Jin, Fan Zhang, Qian Sun, Melissa Romanus, , Norbert Podhorszki, Scott Klasky, Hemanth Kolla, Jacqueline Chen, , Robert Hager, Choong-Seock Chang, Manish Parashar . “Exploring Data Staging Across Deep Memory Hierarchies for Coupled Data Intensive Simulation Workflows,” In 29th IEEE International Parallel & Distributed Processing Symposium, May, 2015.


[Joh2015a] C.R. Johnson, K. Potter. “Visualization,” In The Princeton Companion to Applied Mathematics, Edited by Nicholas J. Higham, Princeton University Press, pp. 843-846. September, 2015.
ISBN: 9780691150390


[Joh2015d] C.R. Johnson. “Visualization,” In Encyclopedia of Applied and Computational Mathematics, Edited by Björn Engquist, Springer, pp. 1537-1546. 2015.
ISBN: 978-3-540-70528-4


[Kim2015a] Mark Kim, Charles Hansen. “Surface Flow Visualization using the Closest Point Embedding,” In IEEE Pacific Visualization, April, 2015.


[Kim2015b] Mark Kim, Charles Hansen. “GPU Surface Extraction using the Closest Point Embedding,” In SPIE Visualization and Data Analysis, February, 2015.


[Kim2015c] SeongJo Kim, Yuanrui Zhang, SeungWoo Son, Mahmut Kandemir, Wei-keng Liao, Rajeev Thakur, Alok Choudhary. “IOPro: a parallel I/O profiling and visualization framework for high-performance storage systems,” In Supercomputing, Vol. 71, No. 3, Springer US, pp. 840-870. March, 2015.


[Koo2015a] M. Koo, W. Yoo, A. Sim . “I/O Performance Analysis Framework on Measurement Data from Scientific Clusters,” In International Conference for High Performance Computing, Networking, Storage and Analysis (SC'15), ACM Student Research Competition (SRC), November, 2015.


[Kre2015a] James Kress, Scott Klasky, Norbert Podhorszki, Jong Choi, Hank Childs,, Dave Pugmire. “Loosely Coupled In Situ Visualization: A Perspective on Why it's Here to Stay,” In In Situ infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV-15), held in conjunction with SC15, November, 2015.


[Lan2015a] A. Landge, P.-T. Bremer, A. Gyulassy, V. Pascucci. “Notes on the Distributed Computation of Merge Trees on CW-complexes,” In Proc. TopoInVis, May, 2015.


[Lar2015a] Matthew Larsen, Jeremy Meredith, Paul Navratil, Hank Childs. “Ray-Tracing Within a Data Parallel Framework,” In IEEE Pacific Visualization (PacificVis), April, 2015.


[Lar2015b] M. Larsen, S. Labasan, P. Navrátil, J.S. Meredith,, H. Childs. “Volume Rendering Via Data-Parallel Primitives,” In Eurographics Symposium on Parallel Graphics and Visualization, May, 2015.


[Lar2015c] Matthew Larsen, Eric Brugger, Hank Childs, Jim Eliot, Kevin Griffin,, Cyrus Harrison. “Strawman - A Batch In Situ Visualization and Analysis Infrastructure for Multi-Physics Simulation Codes,” In In Situ infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV-15), held in conjunction with SC15, November, 2015.


[Li2015a] Kelvin Li, Jia-Kai Chou, Kwan-Liu Ma. “High Performance Heterogeneous Computing for Collaborative Visual Analysis,” In Proceedings of 2015 Symposium on Visualization in High Performance Computing, co-located with ACM SIGGRAPH Asia 2015 , ACM, pp. 1-4. November, 2015.


[Lia2015a] Yaxiong Liang, Xu Ji, Hoang Bui, Fan Zhang, Jeremy Logan, Wei Xue, Lizhe Wang, Manish Parashar, Scott Klasky,Weimin Zheng. “TCP Based Data Staging on Supercomputers,” In Supercomputing Frontiers, March, 2015.


[Lil2015a] O. Anatole von Lilienfeld, Raghunathan Ramakrishanan, Matthias Rupp,, Aaron Knoll. “Fourier Series of Atomic Radial Distribution Functions: A Molecular Fingerprint for Machine Learning Models of Quantum Chemical Properties,” In International Journal of Quantum Chemistry, August, 2015.


[Lis2015a] Shaomeng Li, Kenny Gruchalla, Kristin Potter, John Clyne, Hank Childs. “Evaluating the Efficacy of Wavelet Configurations on Turbulent-Flow Data,” In Proceedings of IEEE Symposium on Large Data Analysis and Visualization, October, 2015.


[Liu2015a] Xiaotong Liu, Han-Wei Shen. “The Effects of Representation and Juxtaposition on Graphical Perception of Matrix Visualization,” In ACM Computer-Human Interaction (CHI'2015), April, 2015.


[Liu2015b] Shusen Liu, Bei Wang, Jayaraman J. Thiagarajan, Peer-Timo Bremer, Valerio Pascucci. “Visual Exploration of High-Dimensional Data through Subspace Analysis and Dynamic Projections,” In Eurographics Conference on Visualization (EuroVis), May, 2015.


[Liu2015c] Ruoqian Liu, Ankit Agrawal, Wei-keng Liao, Alok Choudhary, Zhengzhang Chen. “Pruned Search: A Machine Learning Based Meta-Heuristic Approach for Const rained Continuous Optimization,” In the Eighth International Conference on Contemporary Computing, August, 2015.


[Liu2015d] Liu, Xiaotong, Shen, Han-Wei, Hu, Yifan. “Supporting multifaceted viewing of word clouds with focus plus context display,” In Information Visualization Journal, Vol. 14, no. 2, pp. 168-180. April, 2015.


[Liu2015e] Xiaotong Liu, Han-Wei Shen. “Association Analysis for Visual Exploration of Multivariate Scientific Data Sets,” In IEEE Scientific Visualization (SciVis), October, 2015.


[Liu2015f] Xiaotong Liu, Yifan Hu, Stephen North,, Han-Wei Shen. “CorrelatedMultiples: Spatially Coherent Small Multiples with Constrained Multidimensional Scaling,” In Computer Graphics Forum (CGF), January, 2015.


[Liu2015g] Xiaotong Liu, Srinivasan Parthasarathy, Han-Wei Shen,, Yifan Hu. “GalaxyExplorer: Influence-Driven Visual Exploration of Context-Specific Social Media Interactions,” In International World Wide Web Conference (WWW), May, 2015.


[Liu2015h] Shusen Liu, Dan Maljovec, Bei Wang, Peer-Timo Bremer, Valerio Pascucci. “Visualizing High-Dimensional Data: Advances in the Past Decade,” In Proceedings of Eurographics Conference on Visualization (EuroVis), STAR -- State of The Art Report, May, 2015.


[Log2015a] Jeremy Logan, Scott Klasky, Norbert Podhorszki, Lizhe Wang, Wei Xue. “Creating Skeletons for Task-Based Scientific Workflows,” In Supercomputing Frontiers, March, 2015.


[Lor2015a] B. Loring, H. Karimabadi,, V. Rortershteyn. “A Screen Space GPGPU Surface LIC Algorithm for Distributed Memory Data Parallel Sort Last Rendering Infrastructures,” In Proceedings of the 9th International Conference on Numerical Modeling of Space Plasma Flows (ASTRONUM-2014), Long Beach, CA, USA March, 2015.


[Lu2015a] Kewei Lu, Han-Wei Shen. “A compact multivariate histogram representation for query-driven visualization,” In IEEE Symposium on Large Data Analysis and Visualization (LDAV), October, 2015.


[Luo2015a] Xaioqing Luo, Frank Mueller, Philip Carns, John Jenkins, Robert Ross, Shane Snyder, Robert Latham. “ScalaIOExtrap: Elastic I/O Tracing and Extrapolation,” In Proceedings of the Workshop on Extreme-Scale Programming Tools (ESPT 2015), November, 2015.


[Luu2015a] Huong Luu, Marianne Winslett, William Gropp, Kevin Harms, Philip Carns, Robert Ross, Yushu Yao, Suren Byna,, Prabhat. “A Multiplatform Study of I/O Behavior on Petascale Supercomputers,” In Proceedings of the 24th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC 2015), ACM, June, 2015.


[Mal2015a] P. Malakar, V. Vishwanath, T. Munson, C. Knight, M. Hereld, S. Leyffer, M. Papka. “Optimal Scheduling of In Situ Analysis for Large-Scale Scientific Simulations,” In Proceedings of the 28th IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2015), Austin, Texas, USA, November, 2015.


[Mal2015b] P. Malakar, V. Vishwanath. “Hierarchical Read-write Optimizations for Scientific Applications with Multi-variable Structured Datasets,” In Proceedings of the 12th Annual IFIP International Conference on Network and Parallel Computing (NPC), New York City, New York, USA, September, 2015.


[Mal2015c] D. Maljovec, S. Liu, B. Wang, V. Pascucci, P.-T. Bremer, D. Mandelli, C. Smith. “Analyzing simulation-based PRA data through clustering: a BWR station blackout case study,” In Reliability Engineering & System Safety, Note: In Press, submitted, June, 2015.


[Mor2015a] Kenneth Moreland, Ron Oldfield. “Formal Metrics for Large-Scale Parallel Performance,” In High Performance Computing, July, 2015.
DOI: 10.1007/978-3-319-20119-1_34


[Mor2015b] Kenneth Moreland, Matthew Larsen, Hank Childs. “Visualization for Exascale: Portable Performance is Critical,” In Supercomputing Frontiers and Innovations, Vol. 2, No. 3, 2015.
DOI: 10.14529/jsfi150306


[Neu2015a] Tyson Neuroth, Franz Sauer, Weixing Wang, Stephane Ethier, Kwan-Liu Ma. “Scalable Visualization of Discrete Velocity Decompositions using Spatially Organized Histograms,” In Proceedings of LDAV 2015, IEEE, pp. 65-72. October, 2015.
DOI: 10.1109/LDAV.2015.7348073


[Obe2015a] Harald Obermaier, Kenneth I. Joy. “An Automated Approach for Slicing Plane Placement in Visual Data Analysis,” In IEEE Transactions on Visualization and Computer Graphics, May, 2015.


[Phi2015a] S. Philip, B. Summa, J. Tierny, P. Bremer, V. Pascucci. . “Distributed seams for gigapixel panoramas,” In IEEE Transactions on Visualization and Computer Graphics,, Vol. 21, No. 3, pp. 350–362. March, 2015.


[Pra2015a] Prabhat, S.Byna, V. Vishwanath, E. Dart, M. Wehner, W. Collins. “TECA: Petscale Pattern Recognition for Climate Science,” In Proceedings of the 16th International Conference on Computer Analysis of Images and Patterns (CAIP), Valletta, Malta, September, 2015.


[Pug2015a] James Kress, Scott Klasky, Norbert Podhorszki, Jong Choi, Hank Childs, David Pugmire. “Loosely Coupled In Situ Visualization: A Perspective on Why It’s Here to Stay,” In Proceedings of the First Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, Nov, 2015.


[Ran2015a] Stephen Ranshous, Shitian Shen, Danai Koutra, Steve Harenberg, Christos Faloutsos, Nagiza F. Samatova. “Anomaly Detection in Dynamic Networks: A Survey,” In Wiley Interdisciplinary Reviews: Computational Statistics, June, 2015.


[Riz2015a] Silvio Rizzi, Mark Hereld, Joseph A. Insley, Michael E. Papka, Thomas Uram, Venkatram Vishwanath. “Large-Scale Parallel Visualization of Particle-Based Simulations using Point Sprites and Level-Of-Detail,” In Eurographics Parallel Graphics and Visualization (EGPGV), May, 2015.


[Riz2015b] Silvio Rizzi, Mark Hereld, Joseph A. Insley, Michael E. Papka, Thomas Uram, Venkatram Vishwanath. “Large-Scale Co-Visualization for LAMMPS using vl3,” In IEEE Symposium on Large Data Analysis and Visualization (LDAV) - poster, October, 2015.


[Sch2015a] William Schroeder, Robert Maynard, Berk Geveci. “Flying Edges: A High-Performance Scalable Isocontouring Algorithm,” In To appear in the Proceedings of the IEEE Symposium on Large Data Analysis and Visualization (LDAV), Chicago, Illinois, October, 2015.


[Sch2015b] Hendrik A. Schroots, Kwan-Liu Ma. “Volume Rendering with Data Parallel Visualization Frameworks for Emerging High Performance Computing Architectures,” In Proceedings of 2015 Symposium on Visualization in High Performance Computing, co-located with ACM SIGGRAPH Asia 2015, ACM, pp. 1-4. November, 2015.


[Sew2015a] Christopher Sewell, Li-ta Lo, Katrin Heitmann, Salman Habib,, James Ahrens. “Utilizing Many-Core Accelerators for Halo and Center Finding within a Cosmology Simulation,” In Proceedings of the IEEE Symposium on Large Data Analysis and Visualization (LDAV), Chicago, Illinois, October, 2015.


[Sew2015b] Christopher Sewell, Katrin Heitmann, Hal Finkel, George Zagaris, Suzanne T. Parete-Koon, Patricia K. Fasel, Adrian Pope, Nicholas Frontiere, Li-ta Lo, Bronson Messer, Salman Habib,, James Ahrens. “Large-Scale Compute-Intensive Analysis via a Combined In-situ and Co-scheduling Workflow Approach,” In Proceedings of The International Conference for High Performance Computing, Networking, Storage, and Analysis, Austin, Texas, November, 2015.


[Sha2015a] S. Shannigrahi, A. J. Barczyk, C. Papadopoulos, A. Sim, I. Monga, H. Newman, K. Wu, E. Yeh. “Named Data Networking in Climate Research and HEP Applications,” In 21st International Conference on Computing in High Energy and Nuclear Physics (CHEP), 2015.


[Shi2015a] Min Shih, Yubo Zhang, Kwan-Liu Ma. “Advanced Lighting for Unstructured-Grid Data Visualization,” In PacificVis, April, 2015.


[Sny2015a] Shane Snyder, Philip Carns, Robert Latham, Misbah Mubarak, Rob Ross, Christopher Carothers, Babak Behzad, Huong Vu Thanh Luu, Surendra Byna, Prabhat. “Techniques for Modeling Large-Scale HPC I/O Workloads,” In Proceedings of the 6th International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS15), November, 2015.


[Sum2015a] B. Summa, A. A. Gooch, G. Scorzelli, V. Pascucci. “Paint and Click: Unified Interactions for Image Boundaries,” In Computer Graphics Forum, May, 2015.


[Sun2015a] Q. Sun, T. Jin, M. Romanus, H. Bui, F. Zhang, H. Yu, H. Kolla, S. Klasky, J. Chen, M. Parashar. “Adaptive Data Placement For Staging-Based Coupled Scientific Workflows,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, Austin, USA, November, 2015.


[Tan2015a] Yuzuru Tanahashi, Chien-Hsin Hsueh, Kwan-Liu Ma. “An Efficient Framework for Generating Storyline Visualizations from Streaming Data,” In IEEE Transactions on Visualization and Computer Graphics, June, 2015.


[Ton2015a] Xin Tong, Chun-Ming Chen, Han-Wei Shen, Pak Chung Wong. “Interactive Streamline Exploration and Manipulation Using Deformation,” In IEEE Pacific Vis 2015, Hangzhou, China, April, 2015.


[Wid2015a] Wathsala Widanagamaachchi, Karl D. Hammond, Li-Ta Lo, Brian D. Wirth, Francesca Samsel, Christopher Sewell, James Ahrens,, Valerio Pascucci. “Visualization of Large-Scale Atomistic Simulations of Plasma-Surface Interactions,” In Proceedings of EuroVis (short paper), Cagliari, Italy, Note: The results reported in this paper stem from the PISTON / VTK-m work established by SDAV; ‎the specific work for this paper was funded under the SciDAC Plasma Surface Interactions project, May, 2015.


[Wid2015b] W. Widanagamaachchi, P. Klacansky, H. Kolla, J. Chen, A. Bhagatwala, V. Pascucci, P.-T. Bremer. “Tracking Features in Embedded Surfaces: Understanding Extinction in Turbulent Combustion,” In Proc. IEEE Symposium Large-Scale Data Analysis and Visualization, October, 2015.


[Wu2015a] L. Wu, K. Wu, A. Sim, M. Churchill, J. Y. Choi, A. Stathopoulos, C.S. Chang, S. Klasky. “Towards Real-Time Detection and Tracking of Blob-Filaments in Fusion Plasma Big Data,” In Department of Computer Science, College of William and Mary, WM-CS-2015-01, 2015.


[Xie2015a] Jinrong Xie, Franz Sauer, Kwan-Liu Ma. “Fast Uncertainty-driven Large-scale Volume Feature Extraction on Desktop PCs,” In Proceedings of LDAV 2015, IEEE, pp. 17-24. October, 2015.
DOI: 10.1109/LDAV.2015.7348067


[Ye2015a] Yucong Ye, Yang Wang, Robert Miller, Kwan-Liu Ma, Kenji Ono. “In Situ Depth Maps Based Feature Extraction and Tracking,” In Proceedings of LDAV 2015, IEEE, pp. 1-8. October, 2015.
DOI: 10.1109/LDAV.2015.7348065


[Yoo2015a] W. Yoo, M. Koo, Y. Cao, A. Sim, P. Nugent, K. Wu. “PATHA: Performance Analysis Tool for HPC Applications,” In the 34th IEEE International Performance Computing and Communications Conference (IPCCC), 2015.


[Yu2015a] Hongfeng Yu, Jinrong Xie, Kwan-Liu Ma, Hemanth Kolla, Jacqueline H. Chen. “Scalable Parallel Distance Field Construction for Large-Scale Applications,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 21, No. 10, pp. 1187-1200. August, 2015.


[Zha2015a] Wenzhao Zhang, Houjun Tang, Xiaocheng Zou, Steven Harenberg, Qing Liu, Scott Klasky, Nagiza F. Samatova. “Exploring Memory Hierarchy to Improve Scientific Data Read Performance,” In Cluster Computing, September, 2015.


[Zha2015b] Yanwei Zhang, Matthew Wolf, Karsten Schwan, Qing Liu, Greg Eisenhauer,Scott Klasky. “Co-Sites: The Autonomous Distributed Dataflows in Collaborative Scientific Discovery,” In 10th Workshop on Workflows in Support of Large-Scale Science (WORKS ’15), in conjunction with SC'15, November, 2015.


[Zou2015a] Xiaocheng Zou, Kesheng Wu, David A. Boyuka II, Daniel F. Martin, Suren Byna, Houjun Tang, Kushal Bansal, Terry J. Ligocki, Hans Johansen,, Nagiza F. Samatova. “Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data,” In Proc. Cluster, Cloud and Grid Computing (CCGrid), May, 2015.


[Zou2015b] Xiaocheng (Chris) Zou, Suren Byna, Hans Johansen, Daniel Martin, Nagiza F. Samatova, Arie Shoshani, John Wu. “Six-fold Speedup of Ice Calving Detection Achieved by AMR-aware Parallel Connected Component Labeling,” In SciDAC PI Meeting, July, 2015.


2014

[Arg2014a] Alexy Agranovsky, David Camp, Christoph Garth, E. Wes Bethel, Kenneth I. Joy, Hank Childs. “Improved Post Hoc Flow Analysis vis Lagrangian Representations,” In Proceedings of the Large Data Analysis and Visualization Symposium (LDAV), Paris, France, Note: Best Paper Award, pp. 67–75. November, 2014.


[Bha2014a] H. Bhatia, V. Pascucci, R.M. Kirby, P.-T. Bremer. “Extracting Features from Time-Dependent Vector Fields Using Internal Reference Frames,” In Computer Graphics Forum (Proceedings of EuroVis), Vol. 33, No. 3, pp. 21--30. June, 2014.


[Bon2014a] G.P. Bonneau, H.C. Hege, C.R. Johnson, M.M. Oliveira, K. Potter, P. Rheingans, T. Schultz. “Overview and State-of-the-Art of Uncertainty Visualization,” In Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization, Ch. 1, Edited by M. Chen and H. Hagen and C.D. Hansen and C.R. Johnson and A. Kauffman, Springer-Verlag, pp. 3--27. 2014.


[Boy2014a] David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel, Norbert Podhorszki, Qing Liu, Scott Klasky,, Nagiza F. Samatova.. “ Transparent in situ data transformations in ADIOS,” In Proc. Cluster, Cloud and Grid Computing (CCGrid), May, 2014.


[Bre2014a] P.-T. Bremer, I. Hotz, V. Pascucci, R. Peikert. “Topological Methods in Data Analysis and Visualization III,” Mathematics and Visualization, 2014.
ISBN: Bre2014a


[Bui2014a] H. Bui, V. Vishwanath, H. Finkel, K. Harms, J. Leigh, S. Habib, K. Heitmann, M. E. Papka. “Scalable parallel I/O on Blue Gene/Q supercomputer using compression, topology-aware data aggregation, and subfiling,” In Proceedings of the 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2014), Turin, Italy, February, 2014.


[Bui2014b] H. Bui, E.S. Jung, V. Vishwanath, J. Leigh, M. Papka. “Improving Data Movement Performance for Sparse Data Patterns on Blue Gene/Q Supercomputer,” In 7th International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2) held in conjunction with the 43rd International Conference on Parallel Processing, Minneapolis, Minnesota, USA, September, 2014.


[Cha2014a] A. Chaudhuri, T.-Y. Lee, H.-W. Shen, R. Wenger. “Exploring Flow Fields Using Space-filling Analysis of Streamlines,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), In IEEE, No. 99, 2014.
DOI: 10.1109/TVCG.2014.2312009


[Cha2014b] A. Chaudhuri, T.-H. Wei, T.-Y. Lee, H.-W. Shen, T. Peterka. “Efficient Range Distribution Query for Visualizing Scientific Data,” In Proceedings of the 2014 IEEE Pacific Visualization Symposium (PacificVis), 2014.


[Cha2014c] B. Chapman, H. Calandra, S. Crivelli, J. Dongarra, J. Hittinger, C.R. Johnson, S.A. Lathrop, V. Sarkar, E. Stahlberg, J.S. Vetter, D. Williams. “ASCAC Workforce Subcommittee Letter,” Subtitled “DOE ASCAC Committee Report,” 2014.


[Che2014a] Zhengzhang Chen, Seung Woo Son, William Hendrix, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. “NUMARCK: Machine Learning Algorithm for Resiliency and Checkpointing,” In the International Conference for High Performance Computing, Networking, Storage and Analysis, November, 2014.


[Chi2014a] Hsuan-Te Chiu, Jerry Chou, Venkat Vishwanath, Suren Byna,, Kesheng Wu,. “Simplifying Index File Structure to Improve I/O Performance of Parallel Indexing,” In The 20th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2014), 2014.


[Chi2014b] Hank Childs, Scott Biersdorff, David Poliakoff, David Camp, Allen D. Malony. “Particle Advection Performance Over Varied Architectures and Workloads,” In 21th Annual International Conference on High Performance Computing, HiPC 2014, goa, india, dec, 2014.


[Dai2014a] Dong Dai, Robert B. Ross, Philip Carns, Dries Kimpe, Yong Chen. “Using Property Graphs for Rich Metadata Management in HPC Systems,” In Proceedings of the 9th Parallel Data Storage Workshop, IEEE, 11, 2014.


[Doc2014a] Ciprian Docan, Fan Zhang, Tong Jin, Hoang Bui, Qian Sun, Julian Cummings, Norbert Podhorszki, Scott Klasky, Manish Parashar. “ActiveSpaces: Exploring dynamic code deployment for extreme scale data processing,” In Concurrency and Computation: Practice and Experience, 2014.


[Fre2014a] Steffen Frey, Filip Sadlo, Kwan-Liu Ma,, Thomas Ertl. “Interactive Progressive Visualization with Space-Time Error Control,” In Proceedings of IEEE SciVis 2014 (also IEEE TVCG 20(12)), November, 2014.


[Gen2014a] M.G. Genton, C.R. Johnson, K. Potter, G. Stenchikov, Y. Sun. “Surface boxplots,” In Stat Journal, Vol. 3, No. 1, pp. 1--11. 2014.


[Gyu2014a] A. Gyulassy, P.-T. Bremer, R. Grout, H. Kolla, J. Chen,, V. Pascucci. “Stability of dissipation elements: A case study in combustion,” In Computer Graphics Forum, 2014.


[Gyu2014b] Attila Gyulassy, David Guenther, Joshua A. Levine, Julien Tierny, Valerio Pascucci. “Conforming Morse-Smale Complexes,” In Trans. of Vis. and Comp. Graphics, Proc. IEEE Visualization, 2014.


[Ham2014a] Jeff R. Hammond, Andreas Schäfer, Rob Latham. “To INT_MAX...and beyond!,” Subtitled “ Exploring large-count support in MPI,” In Workshop on Exascale MPI at Supercomputing Conference 2014, Nov, 2014.


[Han2014a] C.D. Hansen, M. Chen, C.R. Johnson, A.E. Kaufman, H. Hagen (Eds.). “Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization,” In Mathematics and Visualization, Springer, 2014.


[Hei2014a] Heitmann,K.,Habib,S.,Finkel,H.,Frontiere,N.,Pope,A.,Morozov,V.,Rangel,S.,Kovacs,E.,Kwan,J.,Li, N., Rizzi, S., Insley, J., Vishwanath, V., Peterka, T., Daniel, D., Fasel, P., Zagaris, G.. “Large Scale Simulations of Sky Surveys,” In Computing in Science and Engineering, Sept-Oct, 2014.


[Hua2014a] Jian Huang, Xuechen Zhang, Greg Eisenhauer, Karsten Schwan, Matthew Wolf, Stephane Ethier, Scott Klasky. “Scibox: Online Sharing of Scientific Data via the Cloud,” In International Conference on Parallel and Distributed Processing (IPDPS), IEEE, Feb, 2014.


[Huc2014a] K. A. Huck, K. Potter, D. W. Jacobsen, H. Childs,, A. D. Malony. “Linking Performance Data into Scientific Visualization Tools,” In 1st Workshop on Visual Performance Analysis (VPA), held in conjuction with SC14, New Orleans, LA, Nov. 2014, 2014.


[Hue2014a] A. Huebl, D. Pugmire, F. Schmitt, R. Pausch, M. Bussman. “Visualizing the Radiation of the Kelvin-Helmholtz Instability,” In 7th Triennial Special Issue of the IEEE Images on Plasma Science, In IEEE Images on Plasma Science, April, 2014.


[Jen2014a] John Jenkins, Xiaocheng Zou, Houjun Tang, Dries Kimpe, Robert Ross,, Nagiza F. Samatova. “RADAR: Runtime asymmetric data-access driven scientific data replication,” In Proceedings of the 2014 International Supercomputing Conference, 2014.


[Jin2014a] T. Jin, F. Zhang, Q. Sun, H. Bui, N. Podhorszki, S. Klasky, H. Kolla, J. Chen, R. Hager, C.S. Chang, M. Parashar. “Leveraging Deep Memory Hierarchies for Data Staging in Coupled Data Intensive Simulation Workflows,” In IEEE Cluster 2014, 2014.


[Kar2014a] Karimabadi H., Roytershteyn V., Vu H.X., Omelchenko Y.A., Scudder J., Daughton W., Dimmock A., Nykyri K., Wan M., Sibeck D., Tatineni M., Majumdar A., Loring B., Geveci B.. “The link between shocks, turbulence, and magnetic reconnection in collisionless plasmas,” In Physics of Plasmas, AIP Publishing, 2014.


[Kla2014a] S. Klasky, Q. Liu, H. Abbasi, N. Podhorszki, J. Chen, Hemanth Kolla. “Scaling up Parallel I/O in S3D to 100K cores with ADIOS,” In High Performance Parallel I/O, Edited by Prabhat, Q. Koziol, Taylor and Francis, 2014.


[Kum2014a] S. Kumar, C. Christensen, J. A. Schmidt, P.-T. Bremer, E. Brugger, V. Vishwanath, P. Carns, H. Kolla, R. Grout, J. Chen, M. Berzins, V. Pascucci. “Fast Multi-Resolution Reads of Massive Simulation Datasets,” In Proc. Int. Supercomputing Conference , pp. 314-330. 2014.


[Kum2014b] S. Kumar, J. Edwards, P.-T. Bremer, A. Knoll, C. Christensen, V. Vishwanath, P. Carns, J. A. Schmidt, V. Pascucci. “Efficient I/O and storage of adaptive resolution data,” In Proc. Supercomputing (SC) 2014, 2014.


[Lak2014a] Sriram Lakshminarasimhan, Xiaocheng Zou, David A Boyuka II, Saurabh V Pendse, John Jenkins, Venkatram Vishwanath, Michael E Papka, Scott Klasky,, Nagiza F Samatova.. “Diraq: scalable in situ data-and resource-aware indexing for optimized query performance,” In Cluster Computing, Springer,US, pp. 1-19. 2014.
ISSN: 1386-7857
DOI: 10.1007/s10586-014-0358-z


[Lan2014a] Aaditya G. Landge, Valerio Pascucci, Attila Gyulassy, Janine C. Bennett, Hemanth Kolla, Jacqueline Chen, Peer-Timo Bremer. “In-Situ Feature Extraction of Large Scale Combustion Simulations Using Segmented Merge Trees,” In Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis, SC14, 2014.


[Lat2014a] R. Latham. “Parallel-NetCDF,” In High Performance Parallel I/O, CRC Press, Taylor and Francis Group, October, 2014.


[Lia2014a] W. Liao, R. Thakur. “MPI-IO,” In High Performance Parallel I/O, CRC Press, Taylor and Francis Group, October, 2014.


[Liu2014a] S. Liu, Bei Wang, P.-T. Bremer, V. Pascucci. “Distortion-Guided Structure-Driven Interactive Exploration of High-Dimensional Data,” In Computer Graphics Forum (CGF) (Proceedings of EuroVis), Vol. 33, No. 3, pp. 101--110. 2014.


[Liu2014b] S. Liu, B. Wang, J. Thiagarajan, P.-T. Bremer, V. Pascucci. “Multivariate Volume Visualization through Dynamic Projections,” In Proc. IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2014.


[Liu2014c] Ruoqian Liu,, Ankit Agrawal, Wei-keng Liao,, Alok Choudhary. “Search Space Preprocessing in Solving Complex Optimization Problems,” In the Workshop on Complexity for Big Data held in conjunction with the IEEE International Conference on Big Data, Washington, D.C., U.S.A., October, 2014.


[Lu2014a] Kewei Lu, Han-Wei Shen, Tom Peterka. “Scalable Computation of Stream Surfaces on Large Scale Vector Field,” In ACM/IEEE SC' 14, 2014.


[Mal2014a] D. Maljovec, Bei Wang, J. Moeller, V. Pascucci. “Topology-Based Active Learning,” SCI Technical Report, No. UUSCI-2014-001, SCI Institute, University of Utah, 2014.


[Mal2014b] D. Maljovec, S. Liu, Bei Wang, V. Pascucci, P.-T. Bremer, D. Mandelli, C. Smith. “Analyzing Simulation-Based PRA Data Through Clustering: a BWR Station Blackout Case Study,” In Proceedings of the Probabilistic Safety Assessment & Management conference (PSAM), 2014.


[Man2014a] D. Mandelli, C. Smith, T. Riley, J. Nielsen, J. Schroeder, C. Rabiti, A. Alfonsi, J. Cogliati, R. Kinoshita, V. Pascucci, Bei Wang, D. Maljovec. “Overview of New Tools to Perform Safety Analysis: BWR Station Black Out Test Case,” In Proceedings of the Probabilistic Safety Assessment & Management conference (PSAM), 2014.


[Mil2014a] Robert Miller, Kenneth Moreland, Kwan-Liu Ma. “Finely-Threaded History-Based Topology Computation,” In Eurographics Symposium on Parallel Graphics and Visualization, pp. 41--48. June, 2014.
DOI: 10.2312/pgv.20141083


[Obe2014a] H. Obermaier, K. I. Joy. “Future Challenges for Ensemble Visualization,” In IEEE Computer Graphics and Applications, Vol. 34, No. 3, IEEE, pp. 8--11. May/June, 2014.


[Pal2014a] Diana Palsetia, Mostofa Patwary, William Hendrix, Ankit Agrawal,, Alok Choudhary. “Clique Guided Community Detection,” In the IEEE International Conference on Big Data, Washington, DC, IEEE, pp. 500 - 509. October, 2014.
DOI: 10.1109/BigData.2014.7004267


[Pas2014a] V. Pascucci, P.-T. Bremer, H. Bhatia. “The Natural Helmholtz-Hodge Decomposition For Open-Boundary Flow Analysis,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 99, pp. 1. 2014.
DOI: 10.1109/TVCG.2014.2312012


[Pet2014a] Peterka, T., Morozov, D., Phillips, C.. “High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation,” In Proceedings of SC14, New Orleans, LA, 2014.


[Pod2014a] N. Podhorszki, S. Klasky, Q. Liu, Y. Tian, M. Parashar, K. Schwan, M. Wolf, S. Lakshminarasimhan. “ADIOS,” In High Performance Parallel I/O, Edited by Prabhat, Q. Koziol, Taylor and Francis, 2014.


[Pug2014a] David Pugmire, James Kress, Jeremy Meredith, Norbert Podhorszki, Jong Choi, Scott Klasky. “Towards scalable visualization plugins for data staging workflows,” In Big Data Analytics: Challenges and Opportunities (BDAC-14) Workshop at Supercomputing Conference, Nov, 2014.


[Riz2014a] S. Rizzi, M. Hereld, J. Insley, M. Papka, T. Uram,, V. Vishwanath. “Performance Modeling of vl3 Volume Rendering on GPU-Based Clusters,” In Proceedings of the 14th Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), Swansea, Wales, UK, June 9-10, 2014.


[Riz2014b] S. Rizzi, M. Hereld, J. Insley, M. Papka, T. Uram,, V. Vishwanath. “Large-Scale Parallel Visualization of Particle Datasets using Point Sprites,” In Proceedings of the IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2014), New Orleans, LA [Poster]., November, 2014.


[Ros2014a] R. Ross, D. Kimpe. “Storage Models: Past, Present, and Future,” In High Performance Parallel I/O, CRC Press, Taylor and Francis Group, October, 2014.


[Rub2014a] Oliver Ruebel, Cameron G.R. Geddes, Min Chen, Estelle Cormier-Michel, E. Wes Bethel. “Feature-based Analysis of Plasma-based Particle Acceleration Data,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), In IEEE Transactions on Visualization and Computer Graphics, July, Vol. 20, No. 2, February, 2014.


[San2014a] A.R. Sanderson. “An Alternative Formulation of Lyapunov Exponents for Computing Lagrangian Coherent Structures,” In Proceedings of the 2014 IEEE Pacific Visualization Symposium (PacificVis), Yokahama Japan, 2014.


[Sau2014a] Franz Sauer, Hongfeng Yu,, Kwan-Liu Ma. “Trajectory-based Flow Feature Tracking in Joint Particle/Volume Datasets,” In Proceedings of IEEE SciVis 2014 (also IEEE TVCG 20(12)), November, 2014.


[Sha2014a] Sohail Shafii, Harald Obermaier, Bernd Hamann, Kenneth I. Joy. “Topological Features in Glyph-Based Corotation Visualization,” In Topological Methods in Data Analysis and Visualization III - Theory, Algorithms, and Applications, Mathematics and Visualization, Springer International Publishing, pp. 263--276. 2014.
ISBN: 978-3-319-04098-1
DOI: 10.1007/978-3-319-04099-8_17


[Shi2014a] Min Shih, Yubo Zhang, Kwan-Liu Ma, Jayanarayanan Sitaraman,, Dimitri J. Mavriplis. “Out-of-Core Visualization of Time-Varying Hybrid-Grid Volume Data,” In Proceedings of LDAV, November, 2014.


[Sol2014a] Solomon Lasluisa, Fan Zhang, Tong Jin, Ivan Rodero, Hoang Bui, Manish Parashar. “In-situ feature-based objects tracking for data-intensive scientific and enterprise analytics workflows,” In Cluster Computing, 2014.


[Son2014a] Seung Woo Son, Zhengzhang Chen, William Hendrix, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. “Data Compression for the Exascale Computing Era - Survey,” In Supercomputing frontiers and innovations, Vol. 1, No. 2, pp. 76-88. September, 2014.
ISSN: 2313-8734
DOI: 10.14529/jsfi140205


[Sun2014a] Qian Sun, Fan Zhang, Tong Jin, Hoang Bui, Kesheng Wu, Arie Shoshani, Hemanth Kolla, Scott Klasky, Jacqueline Chen, Manish Parashar. “Scalable Run-time Data Indexing and Querying for Scientific Simulations,” In Big Data Analytics: Challenges and Opportunities (BDAC-14) Workshop at Supercomputing Conference, November, 2014.


[Tan2014a] Houjun Tang, Xiaocheng Zou, John Jenkins, David A. Boyuka II, Stephen Ranshous, Dries Kimpe, Scott Klasky,, Nagiza F. Samatova. “Improving Read Performance with Online Access Pattern Analysis and Prefetching,” In Proc. of 20th International European Conference on Parallel Processing, 2014.


[Vis2014a] V. Vishwanath, H. Bui, M. Hereld, M. Papka. “GLEAN,” In High Performance Parallel I/O, CRC Press, Taylor and Francis Group, October, 2014.


[Web2014a] Gunther H. Weber, Hans Johansen, Daniel T. Graves, Terry J. Ligocki. “Simulating Urban Environments for Energy Analysis,” In Proceedings Visualization in Environmental Sciences 2014 (EnvirVis 2014), 2014.


[Web2014b] Weber, G. H., Hauser, H.. “Interactive visual exploration and analysis,” In Scientific Visualization: Uncertainty, Multifield, Bio-Medical and Scalable Visualization, Mathematics and Visualization (Hansen, C. D., Chen, M., Johnson, C. R., Kaufman, A. E., and Hagen, H., eds.), Springer-Verlag, pp. 161–174. 2014.


[Wid2014a] Wathsala Widanagamaachchi, Peer-Timo Bremer, Christopher Sewell, Li-ta Lo, James Ahrens,, Valerio Pascucci. “Data-Parallel Halo Finding with Variable Linking Lengths,” In Proceedings of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), Paris, France, November, 2014.


[Won2014a] Pak Chung Wong, Han-Wei Shen, Ruby Leung, Samson Hagos, Teng-Yok Lee, Xin Tong, Kewei Lu. “Visual Analytics of Large-Scale Climate Model Data,” In IEEE Syposium on Large Data Analysis and Visualization (LDAV 2014), October, 2014.


[Zha2014a] Yanwei Zhang, Qing Liu, Scott Klasky, Matthew Wolf, Karsten Schwan, Gregg Eisenhauer, Jong Choi, Norbert Podhorszki. “Active Workflow System for Near Real-Time Extreme-Scale Science,” In PPoPP Workshop on Parallel Programming for Analytics Applications , 2014.


[Zha2014b] L. Zhang, Q. Deng, R. Machiraju, A. Rangaragjan, D. Thompson, D. K. Walters, Han-Wei Shen. “Boosting Techniques for Physics-Based Vortex Detection,,” In Computer Graphics Forum, Vol. 33, Issue 1, pp. 282-293. February, 2014.


[Zho2014a] L. Zhou, C.D. Hansen. “GuideME: Slice-guided Semiautomatic Multivariate Exploration of Volumes,” In Proceedings of the Eurographics Conference on Visualization (EuroVis) 2014, Vol. 33, No. 3, 2014.


[Zou2014a] Xiaocheng Zou, Sriram Lakshminarasimhan , David A. Boyuka II, Stephen Ranshous, Houjun Tang, Scott Klasky ,, Nagiza F. Samatova. “Fast Set Intersection through Run-time Bitmap Construction over PForDelta-compressed Indexes,” In Proc. of 20th International European Conference on Parallel Processing (EuroPar), 2014.


2013

[Agr2013a] A. Agranovsky, H. Obermaier, K. I. Joy. “A Framework for the Visualization of Finite-Time Continuum Mechanics Effects in Time-Varying Flow,” In 9th International Symposium on Visual Computing (ISVC 2013), 2013.


[Ahe2013a] S. Ahern, E. Brugger, B. Whitlock, J. S. Meredith, K. Biagas, M. C. Miller, H. Childs. “VisIt: Experiences with Sustainable Software,” In Workshop on Sustainable Software for Science: Practice and Experiences, IEEE Supercomputing 2013, Nov, 2013.


[Beh2013a] B. Behzad, H. Luu, J. Huchette, S. Byna, Prabhat, R. Aydt, Q. Koziol,, M. Snir. “Taming Parallel I/O Complexity with Auto-Tuning,” In SC13, Nov, 2013.


[Bet2013a] E. Wes Bethel, Prabhat, Suren Byna, Oliver Rbel, K. John Wu, Michael Wehner. “Why High Performance Visual Data Analytics is both Relevant and Difficult,” In Proceedings of Visualization and Data Analysis 2013, IS&T/SPIE Electronic Imaging, San Francisco, CA, USA, 2013.


[Bha2013a] H. Bhatia, G. Norgard, V. Pascucci,, P.-T. Bremer. “The Helmholtz-Hodge decomposition- a survey,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 19, No. 8, pp. 1386--1404. 2013.


[Bha2013b] H. Bhatia, G. Norgard, V. Pascucci, P.-T. Bremer. “Comments on the Meshless Helmholtz-Hodge decomposition,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 3, pp. 527--528. March, 2013.
DOI: 10.1109/TVCG.2012.62


[Bha2013c] Harsh Bhatia, Attila Gyulassy, Hao Wang, Peer-Timo Bremer, Valerio Pascucci. “Robust Detection of Singularities in Vector Fields,” In Topological Methods in Data Analysis and Visualizatuion (TopoInVis) , 2013.


[Bha2013d] H. Bhatia, B. Wang, G. Norgard, V. Pascucci, P.-T. Bremer. “Local, Smooth, and Consistent Jacobi Set Simplification,” In Cornell University Library, No. arXiv:1307.7752, 2013.


[Bis2013a] A. Biswas, S. Dutta, H.-W. Shen, J. Woodring. “An information-aware framework for exploring multivariate data sets,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 19, No. 12, pp. 2683--2692. 2013.


[Bro2013a] C. Brownlee, T. Ize, C.D. Hansen. “Image-parallel Ray Tracing using OpenGL Interception,” In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2013), pp. 65--72. 2013.


[Byn2013a] S. Byna, A. Uselton, Prabhat, D. Knaak,, Y. He. “Trillion Particles, 120,000 cores, and 350 TBs: Lessons Learned from a Hero I/O Run on Hopper,” Cray User Group meeting, 2013.


[Cam2013a] David Camp, E. Wes Bethel, Hank Childs. “Transitioning Data Flow-Based Visualization Software to Multi-Core Hybrid Parallelism,” In 3rd International Workshop on Data-Flow Execution Models for Extreme Scale Computing (DFM 2013), September, 2013.


[Car2013a] P. Carns, Y. Yao, K. Harms, R. Latham, R. Ross, K. Antypas. “Production I/O Characterization on the Cray XE6,” In Proceedings of the Cray User Group meeting 2013 (CUG 2013), May, 2013.


[Cha2013a] Yu-Hsuan Chan, Carlos Correa,, Kwan-Liu Ma. “The Generalized Sensitivity Scatterplot,” In IEEE Transactions on Visualization and Computer Graphics, 2013.


[Cha2013b] J. Chandler, H. Obermaier, K. I. Joy. “Illustrative Rendering of Particle Systems,” In Proc. of Vision, Modeling, and Visualization (VMV 2013), pp. 177-185. 2013.


[Che2013a] J. Chen, A. Choudhary, S. Feldman, B. Hendrickson, C.R. Johnson, R. Mount, V. Sarkar, V. White, D. Williams. “Synergistic Challenges in Data-Intensive Science and Exascale Computing,” DOE ASCAC Data Subcommittee Report, Department of Energy Office of Science, March, 2013.


[Che2013b] Chun-Ming Shen, Han-Wei Shen. “Graph-based Seed Scheduling for Out-of-core FTLE and Pathline Computation ,” In IEEE 2013 Large Data Analysis and Visualization , Atlanta, GA, IEEE, 2013.


[Che2013c] C. Chen, H.-W. Shen. “Graph-based seed scheduling for out-of-core FTLE and pathline computation,” In Proceedings of the 2013 IEEE LDAV Symposium, Note: Received Honorable Mention, pp. 15--32. October, 2013.


[Che2013d] F. Chen, H. Obermaier, H. Hagen, B. Hamann, J. Tierny, V. Pascucci. “Topology analysis of time-dependent multi-fluid data using the Reeb graph,” In Computer Aided Geometric Design, Vol. 30, No. 6, pp. 557--566. 2013.
DOI: 10.1109/TVCG.2012.62


[Chi2013a] Hank Childs, Berk Geveci, Will Schroeder, Jeremy Meredith, Kenneth Moreland, Christopher Sewell, Torsten Kuhlen, E. Wes Bethel. “Research Challenges for Visualization Software,” In IEEE Computer, Vol. 46, No. 5, pp. 34--42. May, 2013.
DOI: 10.1109/MC.2013.179


[Gam2013a] M. Gamell, I. Rodero, M. Parashar, J.C. Bennett, H. Kolla, J. Chen, P. Bremer, A.G. Landge, A. Gyulassy, P. McCormick, S. Pakin, V. Pascucci. “Exploring Power Behaviors and Tradeoffs of In-situ Data Analytics,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Denver, Colorado, U.S.A, No. 77, November, 2013.
ISBN: 978-1-4503-2378-9
DOI: 10.1145/2503210.2503303


[Gam2013b] Marc Gamell, Ivan Rodero, Manish Parashar, Stephen W. Poole. “Exploring Energy and Performance Behaviors of Data-Intensive Scientific Workflows on Systems with Deep Memory Hierarchies,” In IEEE International Conference on High Performance Computing (HiPC), December, 2013.


[Ger2013a] S. Gerber, O. Reubel, P.-T. Bremer, V. Pascucci, R.T. Whitaker. “Morse-Smale Regression,” In Journal of Computational and Graphical Statistics, Vol. 22, No. 1, pp. 193-214. 2013.


[Gon2013a] Z. Gong, D. A. Boyuka II, X. Zou, Q. Liu, N. Podhorszki, S. Klasky, X. Ma, N. F. Samatova. “PARLO: PArallel Run-time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns,” 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), Delft, The Netherlands, May, 2013.


[Gos2013a] L. Gosink, K. Bensema, T. Pulsipher, H. Obermaier, M. Henry, H. Childs, K. I. Joy. “Characterizing and Visualizing Predictive Uncertainty in Numerical Ensembles Through Bayesian Model Averaging,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 12, pp. 2703-2712. 2013.


[Gro2013a] A. Grosset, M. Schott, G.-P. Bonneau, C.D. Hansen. “Evaluation of Depth of Field for Depth Perception in DVR,” In Proceedings of the 2013 IEEE Pacific Visualization Symposium (PacificVis), pp. 81--88. 2013.


[Hab2013a] S. Habib, V. Morozov, N. Frontiere, H. Finkel, A. Pope, K. Heitmann, K. Kumaran, V. Vishwanath, T. Peterka, J. Insley, D. Daniel, P. Fasel, Z. Lukic. “HACC: Extreme Scaling and Performance Across Diverse Architectures,” In the Proceedings of the IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2013), Denver, Colorado, USA, November 2013, Note: Gordon Bell Finalist, 2013.


[Hal2013a] M. Hall, R.M. Kirby, F. Li, M.D. Meyer, V. Pascucci, J.M. Phillips, R. Ricci, J. Van der Merwe, S. Venkatasubramanian. “Rethinking Abstractions for Big Data: Why, Where, How, and What,” In Cornell University Library, No. arXiv:1306.3295, 2013.


[Hen2013a] W. Hendrix, D. Palsetia, M. M. A. Patwary, A. Agrawal, W.-k. Liao, A. Choudhary. “A Scalable Algorithm for Single-Linkage Hierarchical Clustering on Distributed Memory Architectures,” In Proceedings of 3rd IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2013.


[Her2013a] S Herbein, M Matheny, Matthew Wezowicz, J Krogel, Jeremy Logan, J Kim, Scott Klasky, Michela Taufer. “Performance Impact of I/O on QMCPack Simulations at the Petascale and Beyond,” In Computational Science and Engineering (CSE), 2013.


[Hol2013a] T. Hollt, A. Magdy, G. Chen, G. Gopalakrishnan, I. Hoteit, C.D. Hansen, M. Hadwiger. “Visual Analysis of Uncertainties in Ocean Forecasts for Planning and Operation of Off-Shore Structures,” In Proceedings of IEEE Pacific Visualization 2013, Note: Received Honerable Mention, 2013.


[Hum2013a] M. Hummel, H. Obermaier, C. Garth, K. I. Joy. “Comparative Visual Analysis of Lagrangian Transport in CFD Ensembles,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 12, Note: Recieved Best Paper award, pp. 2743-2752. 2013.


[Jen2013a] J. Jenkins, I. Arkatkar, S. Lakshminarasimhan, D. A. Boyuka II, E. R. Schendel, N. Shah, S. Ethier, C.S. Chang, J. Chen, H. Kolla, S. Klasky, R. Ross,, N. F. Samatova. “ALACRITY: Analytics-driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying,” In LNCS Transactions on Large-Scale Data- and Knowledge-Centered Systems (TLDKS), 2013.


[Jin2013a] T. Jin, F. Zhang, Q. Sun, H. Bui, M. Parashar, H. Yu, S. Klasky, N. Podhorszki, H. Abbasi. “Using Cross-Layer Adaptations for Dynamic Data Management in Large Scale Coupled Scientific Workflows,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Denver, Colorado, U.S.A, November, 2013.


[Jin2013b] C. Jin, M. M. A. Patwary, A. Agrawal, W. Hendrix, W.-k. Liao, A. Choudhary. “DiSC: A Distributed Single-Linkage Hierarchical Clustering Algorithm using MapReduce,” In Proceedings of the 4th International SC Workshop on Data Intensive Computing in the Clouds (DataCloud), 2013.


[Kar2013a] Karimabadi, H., Loring, B., O'Leary, P., Majumdar, A., Tatineni, M., Geveci, B.. “In-situ Visualization for Global Hybrid Simulations,” In Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, XSEDE '13, pp. 1-8. 2013.


[Kno2013a] Aaron Knoll, Kah Chun Lau, Bin Liu, Maria K.Y. Chan, Aslihan Sumer, Jeffrey Greeley, Larry Curtiss, Julius Jellinek, Mark Hereld, Michael E. Papka. “Uncertainty Classification and Visualization of Molecular Interfaces,” In International Journal of Uncertainty Quantification, 3(2), 2013.


[Kum2013a] Sidharth Kumar, Avishek Saha, Venkatram Vishwanath, Philip Carns, John A. Schmidt, Giorgio Scorzelli, Hemanth Kolla, Ray Grout, Robert Latham, Robert Ross, Michael E. Papka, Jacqueline Chen, Valeri Pascucci. “Characterization and Modeling of PIDX Parallel I/O for Performance Optimization,” In Proceedings of the ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis (SC), IEEE Computer Society Press, pp. 67. November, 2013.


[Lak2013a] S. Lakshminarasimhan, D. A. Boyuka II, S. V. Pendse, X. Zou, J. Jenkins, V. Vishwanath, M. E. Papka,, N. F. Samatova. “Scalable in situ scientific data encoding for analytical query processing,” In Proceedings of the 21st ACM Symposium on High-Performance Parallel and Distributed Computing (HPDC ), Note: Best Paper Award, 2013.


[Las2013a] S. Lasluisa, F. Zhang, T. Jin, I. Rodero, H. Bui, M. Parashar. “In-situ Feature-based Objects Tracking for Data-Intensive Scientific and Enterprise Analytics Workflows,” In Submitted ot Journal of Cluster Computing, 2013.


[Lea2013a] Nick Leaf, Venkatram Vishwanath, Joseph Insley, Mark Hereld, Michael E. Papka, Kwan-Liu Ma. “Efficient Parallel Volume Visualization of Large-Scale Adaptive Mesh Refinement Data,” In Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV), Note: Best Paper Award, pp. 35--42. 2013.
DOI: 10.1109/LDAV.2013.6675156


[Lee2013a] Teng-Yok Lee, Xin Tong, Han-Wei Shen, Pak Chung Wong, Samson Hagos, L. Ruby Leun. “Feature Tracking and Visualization of Madden-Julian Oscillation in Climate Simulation,” In IEEE Computer Graphics and Applications , IEEE, July, 2013.


[Lee2013b] T.-Y. Lee, H.-W. Shen. “Efficient local statistical analysis via integral histograms with discrete wavelet transform,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 19, No. 12, pp. 2693--2702. 2013.


[Lef2013a] Matthieu Lefebvre, Ebru Bozdag, Henri Calandra, Judy Hill, Wenjie Lei, Daniel Peter, Norbert Podhorszki, Dave Pugmire, Herurisa Rusmanugroho, James Smith, Jeroen Tromp. “A Data Centric View of Large-Scale Seismic Imaging Workflows,” In 4th SC Workshop on Petascale (Big) Data Analytics: Challenges and Opportunities, 2013.


[Lin2013a] K-W Lin, J. Chou, S. Byna,, K. Wu. “Optimizing FastQuery Performance on Luster File System,” 25th International Conference on Scientific and Statistical Database Management (SSDBM) , 2013.


[Liu2013a] Qing Liu, Norbert Podhorszki, Jeremy Logan, Scott Klasky. “Runtime I/O Re-Routing + Throttling on HPC Storage,” In USENIX HotStorage, 2013.


[Liu2013b] Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay Lofstead, Ron Oldfield, Manish Parashar, Nagiza Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu. “Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks,” In Concurrency and Computation: Practice and Experience, 2013.


[Lof2013a] J. Lofstead, R. Ross. “Insights for exascale IO APIs from building a petascale IO API,” In Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis, ACM, November, 2013.


[Luk2013a] Kewei Lu, Abon Chaudhuri, Teng-Yok Lee, Han-Wei Shen, Pak Chung Wong. “Exploring Vector Fields with Distribution-based Streamline Analysis,” In IEEE Pacific Visualization 2013, IEEE, 2013.


[Mal2013a] D. Maljovec, B. Wang, A. Kupresanin, G. Johannesson, V. Pascucci,, P.-T. Bremer. “Adaptive sampling with topological scores,” In International Journal for Uncertainty Quantification, Vol. 3, No. 2, pp. 119--141. 2013.


[Mal2013b] Dan Maljovec, Avishek Saha, Peter Lindstrom, Peer-Timo Bremer, Bei Wang, Carlos Correa, Valerio Pascucci. “A Comparative Study of Morse Complex Approximation Using Different Neighborhood Graphs,” Topological Methods in Data Analysis and Visualizatuion (TopoInVis), 2013.


[Mal2013c] D. Maljovec, B. Wang, V. Pascucci, P.-T. Bremer, M. Pernice, D. Mandelli, R. Nourgaliev. “Exploration of high-dimensional scalar function for nuclear reactor safety analysis and visualization,” In Proceedings of International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering, pp. 712--723. 2013.


[Mal2013d] D. Maljovec, B. Wang, D. Mandelli, P.-T. Bremer, V. Pascucci. “Adaptive Sampling Algorithms for Probabilistic Risk Assessment of Nuclear Simulations,” In Proceedings of the 2013 International Topical Meeting on Probabilistic Safety Assessment and Analysis (PSA 2013), 2013.


[Mal2013e] D. Maljovec, B. Wang, D. Mandelli, P.-T. Bremer, V. Pascucci. “Analyzing Dynamic Probabilistic Risk Assessment Data through Clustering,” In Proceedings of the 2013 International Topical Meeting on Probabilistic Safety Assessment and Analysis (PSA 2013), 2013.


[Mar2013a] Steve Martin, Han-Wei Shen. “Transformations for Volumetric Range Distribution Queries,” In IEEE Pacific Visualization 2013, IEEE, 2013.


[Mar2013b] S. Martin, H.-W. Shen. “Transformations for volumetric range distribution queries,” In Proceedings of the 2013 IEEE Pacific Visualization Symposium (PacificVis), pp. 89--96. 2013.


[May2013a] Robert Maynard, Kenneth Moreland, Utkarsh Ayachit, Berk Geveci, Kwan-Liu Ma. “Optimizing Threshold for Extreme Scale Analysis,” In Proceedings SPIE Visualization and Data Analysis, February, 2013.
DOI: 10.1117/12.2007320


[Mor2013a] Kenneth Moreland. “A Survey of Visualization Pipelines,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 3, pp. 367-378. March, 2013.
DOI: 10.1109/TVCG.2012.133


[Mor2013b] Kenneth Moreland, Berk Geveci, Kwan-Liu Ma, Robert Maynard. “A Classification of Scientific Visualization Algorithms for Massive Threading,” In Proceedings of the 8th International Workshop on Ultrascale Visualization (UltraVis '13), November, 2013.
DOI: 10.1145/2535571.2535591


[Obe2013a] H. Obermaier, K. I. Joy. “Local Data Models for Probabilistic Transfer Function Design,” In Eurographics Conference on Visualization (EuroVis 2013) - Short Papers, pp. 43-47. 2013.


[Pat2013a] M. M. A. Patwary, D. Palsetia, A. Agrawal, W.-k. Liao, F. Manne, A. Choudhary. “Scalable Parallel OPTICS Data Clustering Using Graph Algorithmic Techniques,” In Proceedings of 25th International Conference on High Performance Computing, Networking, Storage and Analysis (Supercomputing, SC), 2013.


[Phi2013a] S. Philip, B. Summa, J. Tierny, P.-T. Bremer V. Pascucci. “Scalable Seams for Gigapixel Panoramas,” In Proceedings of the 2013 Eurographics Symposium on Parallel Graphics and Visualization, Note: Awarded Best Paper!, pp. (to appear). 2013.


[Pri2013a] Iuri Prilepov, Harald Obermaier, Eduard Deines, Christoph Garth, Kenneth I. Joy. “Cubic Gradient-Based Material Interfaces,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 10, pp. 1687-1699. 2013.


[Red2013a] Khairi Reda, Aaron Knoll, Ken-ichi Nomura, Michael E. Papka, Andrew E. Johnson,, Jason Leigh. “ Visualizing Large-Scale Atomistic Simulations in Ultra-Resolution Immersive Environments,” In Proc. IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), pp. 59-65. 2013.


[Rom2013a] A. Romosan, A. Shoshani, K. Wu, V. Markowitz,, K. Mavrommatis. “Accelerating Gene Context Analysis Using Bitmaps,” In 25th International Conference on Scientific and Statistical Database Management (SSDBM), 2013.


[Run2013a] A. Rungta, B. Summa, D. Demir, P.-T. Bremer, V. Pascucci. “ManyVis: Multiple Applications in an Integrated Visualization Environment,” Vol. 19, No. 12, pp. 2878--2885. 2013.


[Sau2013a] F. Sauer, Y. Zhang, S. Ethier, W. Wang,, K.-L. Ma. “Visualizing Velocity Fields from Fusion Simulations using Advected Particle Trajectories,” In The 23rd International Conference on Numerical Simulation of Plasmas (ICNSP), September 14-16, 2013.


[Sch2013a] M. Schott, T. Martin, A.V.P. Grosset, S.T. Smith, C.D. Hansen. “Ambient Occlusion Effects for Combined Volumes and Tubular Geometry,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 19, No. 6, Note: Selected as Spotlight paper for June 2013 issue, pp. 913--926. 2013.
DOI: 10.1109/TVCG.2012.306


[Sch2013b] E. Schendel, S. Harenberg, H. Tang, V. Vishwanath, M.E. Papka, N. Samatova. “A Generic High-performance Method for Deinterleaving Scientific Data,” In 19th International European Conference on Parallel and Distributed Computing (EuroPar), Aachen, Germany, August, 2013.


[Sew2013a] Christopher Sewell, Li-ta Lo,, James Ahrens. “Portable Data-Parallel Visualization and Analysis in Distributed Memory Environments,” In Proceedings of the IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), October, 2013.


[Sha2013a] Sohail Shafii, Harald Obermaier, Rodman Linn, Eunmo Koo, Mario Hlawitschka, Christoph Garth, Bernd Hamann, Kenneth I. Joy. “Visualization and Analysis of Vortex-Turbine Intersections in Wind Farms,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 19, No. 9, pp. 1579-1591. 2013.


[Sha2013b] S. Shafii, H. Obermaier, V. Kolar, M. Hlawitschka, C. Garth, B. Hamann, K. I. Joy. “Illustrative Rendering of Vortex Cores,” In Eurographics Conference on Visualization (EuroVis 2013) - Short Papers, pp. 61-65. 2013.


[Sig2013a] Carmen Sigovan, Chris Muelder,, Kwan-Liu Ma. “Visualizing Large-scale Parallel Communication Traces Using a Particle Animation Technique,” Computer Graphics Forum, 32(3), also Proceedings of EuroVis, 2013.


[Sig2013b] C. Sigovan, C. Muelder, K.-L. Ma, J. Cope, K. Iskra,, R. Ross. “A Visual Network Analysis Methodology for Large Scale Parallel I/O Systems,” Proceedings of IEEE International Parallel & Distributed Processing Symposium, 2013.


[Sis2013a] R. Sisneros, J. Huang, G. Ostrouchov, S. Ahern, B. D. Semeraro. “Contrasting Climate Ensembles: A Model-Based Visualization Approach for Analyzing Extreme Events,” In International Conference on Computational Sciences, Procedia Computer Science, Vol. 18, pp. 2347-2356. 2013.
ISSN: 1877-0509
DOI: 10.1016/j.procs.2013.05.406


[Sla2013a] Magdalena Slawinska, Tanja Bode, Jeremy Logan, Michael Clark, Hongbo Zou, Matthew Kinsey, Matthew Wolf, Pablo Laguna,, Scott Klasky. “A Maya use case: adaptable scientific workflows with ADIOS for general relativistic astrophysics,” In Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery Article No. 54, ACM SIGAPP, July 22-25, 2013. San Diego, CA, USA, 2013.


[Smi2013a] Smith, J. A.; Bozdag, E.; Krischer, L.; Lefebvre, M.; Lei, W.; Podhorszki, N.; Tromp, J. . “An Adaptable Seismic Data Format for Modern Scientific Workflows,” In American Geophysical Union, Fall Meeting, 2013.


[Sum2013a] B. Summa, A. Gyulassy, P.-T. Bremer, V. Pascucci. “Interactive Data Exploration,” In Data Intensive Science. Chapman & Hall/Crc Computational Science, Note: Book chapter, 2013.


[Sun2013a] Q. Sun, F. Zhang, T. Jin, H. Bui, M. Parashar, K. Wu, A. Shoshani, H. Kolla, S. Klasky, J. Chen. “Scalable In-Memory Data Indexing and Querying for Scientific Simulation Workflows,” In Submitted to IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2013.


[Szc2013a] A. F. Szczepanski, Jian Huang, T. Baer, Y. C. Mack, S. Ahern. “Data Analysis and Visualization in High-Performance Computing,” In Computer, Vol. 46, No. 5, IEEE Computer Society, pp. 84-92. May, 2013.
ISSN: 0018-9162
DOI: 10.1109/MC.2012.192


[Tia2013a] Y. Tian, Z, Liu, S. Klasky, B. Wang, H. Abbasi, S. Zhou, N. Podhorszki, T. Clune, J. Logan, W. Yu. “A Lightweight I/O Scheme to Facilitate Spatial and Temporal Queries of Scientific Data Analytics,” In MSST, 2013.


[Tuy2013a] Ying Tu, Han-Wei Shen . “GraphCharter: Combining Browsing with Query to Explore Large Semantic Graphs,” In IEEE Pacific Visualization 2012 , IEEE, 2013.


[Vat2013a] Ranga Raju Vatsavai. “Gaussian multiple instance learning approach for mapping the slums of the world using very high resolution imagery,” In Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 1419--1426. 2013.
DOI: 10.1145/2487575.2488210


[Wan2013a] Yang Wang, Hongfeng Yu,, Kwan-Liu Ma. “ Scalable Parallel Feature Extraction and Tracking for Large Time-varying 3D Volume Data,” Proceedings of Eurographics Symposium on Parallel Graphics and Visualization, 2013.


[Wan2013b] Bei Wang, Paul Rosen, Primoz Skraba, Harsh Bhatia, Valerio Pascucci. “Visualizing Robustness of Critical Points for 2D Time-Varying Vector Fields,” In Computer Graphics Forum (EuroVis), Vol. 32, No. 3, 2013.


[Wan2013c] Y. Wan, H. Otsuna, C.D. Hansen. “Synthetic Brainbows,” In Computer Graphics Forum, Vol. 32, No. 3pt4, pp. 471--480. 2013.


[Web2013a] G.H. Weber, K. Beketayev, P.-T. Bremer, B. Hamann, M. Haranczyk, M. Hlawitschka, V. Pascucci. “Comprehensible Presentation of Topological Information,” No. LBNL-5693E, Lawrence Berkeley National Laboratory, 2013.


[Wei2013a] Tzu-Hsuan Wei, Teng-Yok Lee,, Han-Wei Shen. “Evaluating Isosurfaces with Level-est-based Information Maps,” In EuroVis 2013, Eurographics, 2013.


[Wid2013a] W. Widanagamaachchi, P. Rosen, V. Pascucci. “A Flexible Framework for Fusing Image Collections into Panoramas,” In Proceedings of the 2013 SIBGRAPI Conference on Graphics, Patterns, and Images, Note: Awarded Best Paper!, pp. 195-202. 2013.
DOI: 10.1109/SIBGRAPI.2013.35


[Wil2013a] D. Williams, T. Bremer, C. Doutriaux, J. Patchett, G. Shipman, B. Haugen, R. Miller, B. Smith, C. Steed, W. Bethel, H. Childs, H. Krishnan, M. Wehner, C. T. Silva, E. Santos, D. Koop, T. Ellqvist, H. T. Vo, J. Poco, B. Geveci, A. Chaudhary, A. Bauer, A. Pletzer, D. Kindig, G. L. Potter, T. P. Maxwell. “The Ultra-scale Visualization Climate Data Analysis Tools: Data Analysis and Visualization for Geoscience Data ,” In IEEE Special Issue: Cutting-Edge Research in Visualization , 2013.


[Wu2013a] Y. Wu, X. Liu, S. Liu,, K.-L. Ma. “ViSizer: A Visualization Resizing Framework,” IEEE Transactions on Visualization and Computer Graphics, 19(2):278-290 , 2013.


[Xie2013a] Jinrong Xie, Hongfeng Yu,, Kwan-Liu Ma. “Interactive Ray Casting of Geodesic Grids,” Computer Graphics Forum, 32(3), also Proceedings of EuroVis, 2013.


[Yuc2013a] Yucong Ye, Robert Miller,, Kwan-Liu Ma. “In-Situ Pathtube Visualization with Explorable Images,” Proceedings of Eurographics Symposium on Parallel Graphics and Visualization, 2013.


[Zha2013a] F. Zhang, C. Docan, H. Bui, M. Parashar, S. Klasky. “XpressSpace: A Programming Framework for Coupling PGAS Simulation Codes,” In Journal of Concurrency and Computation: Practice and Experience, Note: (Accepted for publication), 2013.
DOI: 10.1002/cpe.3025


[Zha2013b] Yubo Zhang, Kwan-Liu Ma. “Fast Global Illumination for Interactive Volume Visualization,” Proceedings of ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games (I3D '13), 2013.


[Zha2013c] Yubo Zhang, Zhao Dong,, Kwan-Liu Ma. “Real-time Volume Rendering in Dynamic Lighting Environments using Precomputed Photon Mapping,” IEEE Transactions on Visualization and Computer Graphics, 2013.


[Zhe2013a] F. Zheng, H. Zou, G. Eisnhauer, K. Schwan, M. Wolf, J. Dayal, T. A. Nguyen, J. Cao, H. Abbasi, S. Klasky, N. Podhorszki, H. Yu. “FlexIO: I/O middleware for Location-Flexible Scientific Data Analytics,” submitted to IPDPS 2013, 2013.


[Zhe2013b] L. Zheng, Y. Wu,, K.-L. Ma. “Perceptually Based Depth-Ordering Enhancement for Direct Volume Rendering,” IEEE Transactions on Visualization and Computer Graphics, 19(3):446-459, 2013.


[Zhe2013c] Fang Zheng, Hongfeng Yu, Can Hantas, Matthew Wolf, Greg Eisenhauer, Karsten Schwan, Hasan Abbasi, Scott Klasky. “GoldRush: resource efficient in situ scientific data analytics using fine-grained interference aware execution,” In Proceedings of SC13: International Conference for High Performance Computing, Networking, Storage and Analysis, pp. Article 78. 2013.
DOI: 10.1145/2503210.2503279


[Zho2013a] L. Zhou, C.D. Hansen. “Transfer Function Design based on User Selected Samples for Intuitive Multivariate Volume Exploration,” In Proceedings of the 2013 IEEE Pacific Visualization Symposium (PacificVis), pp. 73--80. 2013.


2012

[Ahe2012a] Sean Ahern. “The Road to Exascale,” In High Performance Visualization: Enabling Extreme-Scale Scientific Insight, Chapman & Hall/CRC Computational Sciencet, Edited by E. Wes Bethel; Hank Childs, Lawrence Berkeley National Laboratory, Berkeley, California, USA; Charles Hansen, University of Utah, Salt Lake City, USA, Chapman & Hall/CRC Computational Science, October, 2012.


[Ben2012a] J. C. Bennett, H. Abbasi, P. Bremer, R. W. Grout, A. Gyulassy, T. Jin, S. Klasky, H. Kolla, M. Parashar, V. Pascucci, P. Pbay, D. Thompson, H. Yu, F. Zhang, J. Chen. “Combining In-Situ and In-Transit Processing to Enable Extreme-Scale Scientific Analysis ,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Salt Lake City, Utah, U.S.A., November, 2012.


[Bha2012b] A. Bhatele, T. Gamblin, S.H. Langer, P.-T. Bremer, E.W. Draeger, B. Hamann, K.E. Isaacs, A.G. Landge, J.A. Levine, V. Pascucci, M. Schulz, C.H. Still. “Mapping applications with collectives over sub-communicators on torus networks,” In Proceedings of Supercomputing 2012, pp. 1-11. 2012.
DOI: 10.1109/SC.2012.75


[Bro2012a] C. Brownlee, T. Fogal, C.D. Hansen. “GLuRay: Ray Tracing in Scientific Visualization Applications using OpenGL Interception,” In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2012), Edited by H. Childs, T. Kuhlen, and F. Marton, pp. 41--50. 2012.
DOI: 10.2312/EGPGV/EGPGV12/041-050


[Bro2012b] C. Brownlee, J. Patchett, L.-T. Lo, D. DeMarle, C. Mitchell, J. Ahrens, C.D. Hansen. “A Study of Ray Tracing Large-scale Scientific Data in Parallel Visualization Applications,” In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (2012), Edited by H. Childs, T. Kuhlen, and F. Marton, 2012.


[Byn2012a] Surendra Byna, Jerry Chou, Oliver Ruebel, Prabhat, Homa Karimabadi, William S. Daughton, Vadim Roytershteyn, E. Wes Bethel, Mark Howison, Ke-Jou Hsu, Kuan-Wu Lin, Arie Shoshani, Andrew Uselton,, Kesheng Wu. “Parallel I/O, Analysis, and Visualization of a Trillion Particle Simulation,” In Proceedings of the international conference on Supercomputing, 2012.


[Byn2012b] S. Byna, J. Chou, O. Rbel, Prabhat, H. Karimabadi, W. S. Daughton, V. Roytershteyn, E. W. Bethel, M. Howison, K-J. Hsu, K-W. Lin, A. Shoshani, A. Uselton,, K. Wu,. “Parallel Data, Analysis, and Visualization of a Trillion Particles,” Lightning Talk and Poster Presentation at the 6th Extremely Large Databases Conference (XLDB), 2012.


[Cam2012a] David Camp, Hank Childs, Christoph Garth, Dave Pugmire, Kenneth I. Joy. “Parallel Stream Surface Computation for Large Data Sets,” In Proceedings of the IEEE Symposium on Large-Scale Data Anaysis and Visualization, Seattle WA, USA, Note: to appear, 2012.


[Cha2012a] Abon Chaudhuri, Han-Wei Shen. “A Self-Adaptive Technique for Visualizing Geospatial Data in 3D with Minimum Occlusion,” In Visualization and Data Analysis Conference in IS&/SPIE Symposium on Electronic Imaging, Note: Best Paper Award, 2012.


[Cha2012b] Abon Chauduhri, Teng-Yok Lee, Cong Wang, Bo Zhou, Tian-Tian Xu, Han-Wei Shen, Tom Peterka, Yi-Jen Chiang. “Scalable Computation of Distributions from Large Scale Data Sets,” In IEEE 2012 Large Data Analysis and Visualization , 2012 , 2012.


[Cha2012c] Abon Chaudhuri, Teng-Yok Lee, Han-Wei Shen. “Exploring Flow Fields Using Fractal Analysis of Field Lines,” In IEEE Visualization 2012 Poster Proceedings (Best Poster Award) , 2012.


[Che2012a] Zhengzhang Chen, William Hendrix, Hang Guan, Isaac K. Tetteh, Alok Choudhary, Fredrick Semazzi, Nagiza F. Samatova. “Discovery of extreme events-related communities in contrasting groups of physical system networks,” In Data Mining and Knowledge Discovery, 2012.
DOI: 10.1007/s10618-012-0289-3


[Che2012b] F. Chen, H. Obermaier, H. Hagen, B. Hamann, J. Tierny, V. Pascucci.. “Topology Analysis of Time-Dependent Multi-Fluid Data Using the Reeb Graph,” In Computer Aided Geometric Design, Note: Published Online Apr. 24, Elsevier, 2012.
DOI: 10.1016/j.cagd.2012.03.019


[Chi2012a] H. Childs, E. Brugger, B. Whitlock, J. Meredith, S. Ahern, K. Bonnell, M. Miller, G. H. Weber, C. Harrison, D. Pugmire, T. Fogal, C. Garth, A. Sanderson, E. W. Bethel, M. Durant, D. Camp, J. M. Favre, O. Rbel, Paul Navrtil. “VisIt: An End-User Tool For Visualizing and Analyzing Very Large Data,” In High Performance Visualization: Enabling Extreme-Scale Scientific Insight, Edited by E. Wes Bethel; Hank Childs, Lawrence Berkeley National Laboratory, Berkeley, California, USA; Charles Hansen, University of Utah, Salt Lake City, USA, Chapman & Hall/CRC Computational Science, October, 2012.


[Chi2012b] H. Childs, D. Pugmire, S. Ahern, B. Whitlock, M. Howison, Prabhat, G. Weber, E. W. Bethel. “Visualization at Extreme Scale Concurrency,” In High Performance Visualization: Enabling Extreme-Scale Scientific Insight, Edited by E. Wes Bethel; Hank Childs, Lawrence Berkeley National Laboratory, Berkeley, California, USA; Charles Hansen, University of Utah, Salt Lake City, USA, Chapman & Hall/CRC Computational Science, October, 2012.


[Cho2012a] A.N.M. Imroz Choudhury, B. Wang, P. Rosen, V. Pascucci. “Topological Analysis and Visualization of Cyclical Behavior in Memory Reference Traces,” In Proceedings of the IEEE Pacific Visualization Symposium (PacificVis 2012), pp. 9--16. 2012.
DOI: 10.1109/PacificVis.2012.6183557


[Chu2012a] Chun-Ming Chen, Lijie Xu, Teng-Yok Lee, Han-Wei Shen. “A Flow Guided Layout for Out-of-Core Streamline Computation,” In Proceedings of IEEE Pacific Visualization, 2012.


[Cor2012a] C. Correa, T. Crnovrsanin,, K.-L. Ma. “ Visual Reasoning about Social Networks using Centrality Sensitivities,” IEEE Transactions on Visualization and Computer Graphics, 18(1): 106-120, 2012.


[Fou2012a] Nathaniel Fout, Kwan-Liu Ma. “Fuzzy Volume Rendering,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, Note: (Also a Visualization 2012 Conference paper), pp. 2335-2344. 2012.


[Fou2012b] Nathaniel Fout, Kwan-Liu Ma. “An Adaptive PRediction-Based Approach to Lossless Compression of Floating-Point Volume Data,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, Note: (Also a Visualization 2012 Conference paper), pp. 2295-2304. 2012.


[Gai2012a] K. Gaither, H. Childs, K. Schulz, C. Harrison, W. Barth, D. Donzis, P. Yeung. “Visual Analytics for Finding Critical Structures in Massive Time-Varying Turbulent-Flow Simulations,” In Computer Graphcs and Applications, Vol. 32, No. 4, IEEE, pp. 34-45. July-Aug, 2012.


[Ger2012a] S. Gerber, O. Reubel, P.-T. Bremer, V. Pascucci, R.T. Whitaker. “Morse-Smale Regression,” In Journal of Computational and Graphical Statistics, Vol. 22, No. 1, pp. 193--214. 2012.
DOI: 10.1080/10618600.2012.657132


[Gon2012a] Z. Gong, S. Lakshminarasimhan, J. Jenkins, H. Kolla, S. Ethier, J. Chen, R. Ross, S. Klasky, N. Samatova. “Multi-level layout optimizations for efficient spatio-temporal queries of ISABELA-compressed data,” In The 26th IEEE International Parallel & Distributed Processing Symposium (IPDPS), May, 2012.


[Gon2012b] Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stephane Ethier, Jackie Chen, Robert Ross, Scott Klasky, Nagiza F. Samatova. “MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns,” In International Conference on Parallel Processing (ICPP), Pittsburgh, PA, September, 2012.


[Gro2012a] R. Grout, A. Gruber, H. Kolla, P.-T. Bremer, J. Bennett, A. Gyulassy, J. Chen. “A direct numerical simulation study of turbulence and flame structure in transverse jets analysed in jet-trajectory based coordinates,” In Journal of Fluid Mechanics 706 , pp. 351-383 . 2012.


[Gyu2012a] A. Gyulassy, V. Pascucci, T. Peterka, R. Ross. “The Parallel Computation of Morse-Smale Complexes,” In Parallel & Distributed Processing Symposium (IPDPS), pp. 484--495. 2012.
DOI: 10.1109/IPDPS.2012.52


[Gyu2012b] A. Gyulassy, P.-T. Bremer, V. Pascucci. “Computing Morse-Smale Complexes with Accurate Geometry,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, pp. 2014--2022. 2012.
DOI: 10.1109/TVCG.2011.272


[Gyu2012c] A. Gyulassy, N. Kotava, M. Kim, C. Hansen, H. Hagen,, V. Pascucci. “Direct Feature Visualization Using Morse-Smale Complexes,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 9, pp. 1549--1562. Sept., 2012.
DOI: 10.1109/TVCG.2011.272


[Hab2012a] Habib, S., Morozov, V., Finkel, H., Pope, A., Heitmann, K., Kumaran, K., Peterka, T., Insley, J., Daniel, D., Fasel, P., Frontiere, N., Lukic, Z.. “The Universe at Extreme Scale: Multi-Petaflop Sky Simulation on the BG/Q,” In Proceedings of SC12, 2012.


[Har2012a] C. Harrison, H. Krishnan. “Python's role in VisIt,” In the Proceedings of the eleventh annual Scientific Computing with Python Conference, (SciPy 2012), July, 2012.


[Har2012b] C. Harrison, P. A. Navrtil, M. Moussalem, M. Jiang, H. Childs. “Efficient Dynamic Derived Field Generation on Many-Core Architectures,” In Proceedings of Workshop on Python for High Performance and Scientific Computing, (PyHPC 2012), November, 2012.


[Hen2012a] William Hendrix, Md. Mostofa Ali Patwary, Ankit Agrawal, Wei-keng Liao, Alok Choudhary. “Parallel Hierarchical Clustering on Shared Memory Platforms,” In 19th Annual International Conference on High Performance Computing, Pune, India, 2012.


[Hsu2012a] Wei-Hsien Hsu, Chun-Fu Wang, Kwan-Liu Ma, Hongfeng Yu,, Jacqueline H. Chen. “A Job Scheduling Design for Visualization Services using GPU Clusters,” In Proceedings of IEEE Cluster 2012, pp. 523-533. September, 2012.


[Jad2012a] S. Jadhav, H. Bhatia, P.-T. Bremer, J.A. Levine, L.G. Nonato, V. Pascucci. “Consistent Approximation of Local Flow Behavior for 2D Vector Fields,” In Topological Methods in Data Analysis and Visualization II. Mathematics and Visualization, No. 3, pp. 141--159. 2012.
DOI: 10.1007/978-3-642-23175-9 10


[Jen2012a] John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel, Stephane Ethier, CS Chang, Jackie Chen, Hemanth Kolla, Scott Klasky, Robert Ross,, Nagiza F. Samatova. “Analytics-driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying,” In Proceedings of the 23rd International Conference on Database and Expert Systems Applications (DEXA), September, 2012.


[Jen2012b] John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur. “Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments,” In IEEE International Conference on Cluster Computing (Cluster), Beijing, China, September, 2012.


[Jen2012c] John Jenkins, Eric Schendel, Sriram Lakshminarasimhan, David A. Boyuka III, Terry Rogers, Stephane Ethier, Robert Ross, Scott Klasky, Nagiza, F. Samatova. “Byte-precision Level of Detail Processing for Variable Precision Analysis,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Salt Lake City, Utah, U.S.A., November, 2012.


[Jia2012b] F. Jiao, J.M. Phillips, Y. Gur, C.R. Johnson. “Uncertainty Visualization in HARDI based on Ensembles of ODFs,” In Proceedings of the 5th IEEE Pacific Visualization Symposium (PacificVis 2012), pp. 193--200. 2012.


[Jin2012a] T. Jin, F. Zhang, M. Parashar, S. Klasky, N. Podhorszki, H. Abbasi. “A Scalable Messaging System for Accelerating Discovery from Large Scale Scientific Simulations,” In IEEE International Conference on High Performance Computing (HiPC), December, 2012.


[Joh2012a] C.R. Johnson. “Biomedical Visual Computing: Case Studies and Challenges,” In IEEE Computing in Science and Engineering, Vol. 14, No. 1, pp. 12--21. 2012.


[Ker2012a] Thomas Kerwin, D. Stredney, G. Wiet, Han-Wei Shen. “Virtual Mastoidectomy performance evaluation through multi-volume analysis,” In Computer Assisted Radiology and Surgery (CARS), 2012.


[Kim2012a] M. Kim, G. Chen, C.D. Hansen. “Dynamic particle system for mesh extraction on the GPU,” In Proceedings of the 5th Annual Workshop on General Purpose Processing with Graphics Processing Units, London, England, pp. 38--46. 2012.
DOI: 10.1145/2159430.215943


[Kne2012a] J. Knezevic, R.-P. Mundani, E. Rank, A. Khan, C.R. Johnson. “Extending the SCIRun Problem Solving Environment to Large-Scale Applications,” In Applied Computing, Madrid, Spain, IADIS, pp. 171--178. 2012.


[Kri2012a] Hari Krishnan, Christoph Garth, Jens Guhring, M. Akif Gulsun, Andreas Greiser,, Kenneth I. Joy. “Analysis of Time-Dependent Flow-Sensitive PC-MRI Data,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 6, pp. 966--977. June, 2012.


[Kum2012a] S. Kumar, V. Vishwanath, P. Carns, J.A. Levine, R. Latham, G. Scorzelli, H. Kolla, R. Grout, R. Ross, M.E. Papka. “Efficient data restructuring and aggregation for I/O acceleration in PIDX,” In Proceedings of the ACM/IEEE Conference on High Performance Computing, Networking, Storage and Analysis (SC), IEEE Computer Society Press, pp. 50:1--50:11. 2012.
ISBN: 978-1-4673-0804-5


[Lak2012a] Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao, Alok Choudhary, Vipin Kumar,, Nagiza F. Samatova. “On the Path to Sustainable, Scalable, and Energy-efficient Data Analytics: Challenges, Promises, and Future Directions,” In Proceedings of the 2012 International Green Computing Conference (IGCC), San Jose, CA, U.S.A., Note: Invited paper, June, 2012.


[Lak2012b] Sriram Lakshminarasimhan, Neil Shah, Stephane Ethier, Seung-Hoe Ku, C.S. Chang, Scott Klasky, Rob Latham, Rob Ross, Nagiza F. Samatova. “ISABELA for Effective In-situ Compression of Scientific Data,” In Concurrency and Computation: Practice and Experience, Note: Invited paper, 2012.


[Lan2012a] A.G. Landge, J.A. Levine, A. Bhatele, K.E. Isaacs, T. Gamblin, S. Langer, M. Schulz, P.-T. Bremer, V. Pascucci. “Visualizing Network Traffic to Understand the Performance of Massively Parallel Simulations,” In IEEE Symposium on Information Visualization (INFOVIS'12), Seattle, WA, Vol. 18, No. 12, pp. 2467--2476. 2012.
DOI: 10.1109/TVCG.2012.286


[Lat2012a] R. Latham, C. Daley, W. Liao, K. Gao, R. Ross, A. Dubey, A. Choudhary. “A case study for scientific I/O: improving the FLASH astrophysics code,” In Computational Science & Discovery, Vol. 5, No. 1, pp. 015001. 2012.


[Li2012a] Z. Li, S. Wang, J. Yu,, K.-L. Ma. “Restoration of Brick and Stone Relief from Single Rubbing Images,” IEEE Transactions on Visualization and Computer Graphics. 18(2):177-187, 2012.


[Liu2012a] Shusen Liu, Joshua A. Levine, Peer Timo Bremer, Valerio Pascucci. “Gaussian Mixture Model Based Volume Rendering ,” 2012 IEEE Symposium on Large Data Analysis and Visualization (LDAV), Note: Best Paper Honorable Mention, pp. 73--77. 2012.
DOI: 10.1109/LDAV.2012.6378978


[Lo2012a] Li-ta Lo, Christopher Sewell,, James Ahrens. “PISTON: A Portable Cross-Platform Framework for Data-Parallel Visualization Operators,” In EGPGV.12: Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization 2012, May, 2012.


[Luo2012a] S.-J. Luo, C.-L. Liu, B.-Y. Chen,, K.-L. Ma. “Ambiguity-Free Edge-Bundling for Interactive Graph Visualization,” IEEE Transactions on Visualization and Computer Graphics, 18(5):810-821, 2012.


[Ma2012a] J. Ma, I. Liao, J. Frazier,, K.-L. Ma. “Living Liquid: Design and Evaluation of an Exploratory Visualization Tool for Museum Visitors,” IEEE Transactions on Visualization and Computer Graphics, 18(12):2799-2808, 2012.


[Ma2012b] K.-L. Ma et al.. “Scientific Storytelling using Visualization,” IEEE Computer Graphics and Applications, 32(1):12-19, Jan/Feb, 2012.


[Maj2012a] Joyce Ma, Isaac Liao, Jennifer Frazier, Kwan-Liu Ma. “Living Liquid: Design and Evaluation of an Exploratory Visualization Tool for Museum Visitors,” Vol. 18, No. 12, Note: (Also an InfoVis 2012 Conference paper), pp. 2799-2808. 2012.


[Mar2012a] Steve Martin, Han-Wei Shen . “Interactive Transfer Function Design on Large Multiresolution Volumes,” In IEEE 2012 Large Data Analysis and Visualization , IEEE, 2012.


[Mar2012b] T. Martin, G. Chen, S. Musuvathy, E. Cohen, C.D. Hansen. “Generalized Swept Mid-structure for Polygonal Models,” In Proceedings of Eurographics 2012, Vol. 31, No. 2, pp. 805--814. 2012.
DOI: 10.1111/j.1467-8659.2012.03061.x


[Mcl2012a] W. C. McLendon, G. Bansal, P.-T. Bremer, J. Chen, H. Kolla, J. Bennett. “On The Use of Graph Search Techniques for The Analysis of Extreme-scale Combustionc Simulation Data,” Proceedings of IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2012.


[Mer2012a] Jeremy S. Meredith, Sean Ahern, David Pugmire, Robert Sisneros. “EAVL: The Extreme-scale Analysis and Visualization Library,” In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), 2012.


[Mer2012b] J. Meredith, R. Sisneros, D. Pugmire, S. Ahern. “A Distributed Data-Parallel Framework for Analysis and Visualization Algorithm Development,” In Fifth Workshop on General Purpose Processing on Graphics Processing Units (GPGPU), ACM Architectural Support for Programming Languages and Operating Systems, March, 2012.


[Mor2012a] Kenneth Moreland. “Redirecting Research in Large-Format Displays for Visualization,” In Proceedings of the IEEE Symposium on Large-Scale Data Anaysis and Visualization, pp. 91--95. October, 2012.


[Mor2012b] Kenneth Moreland, Brad King, Robert Maynard, Kwan-Liu Ma. “Flexible Analysis Software for Emerging Architectures,” In Petascale Data Analytics: Challenges and Opportunities (PDAC-12), November, 2012.


[Mor2012c] Kenneth Moreland, Jeremy Meredith, Berk Geveci. “Enabling Production-Quality Scientific-Discovery Tools with Data and Execution Models,” No. SAND 2012-10796P, Sandia National Laboratories, December, 2012.


[Mor2012d] Kenneth Moreland. “Oh, $#*@! Exascale! The Effect of Emerging Architectures on Scientific Discovery,” In 2012 SC Companion (Proceedings of the Ultrascale Visualization Workshop), pp. 224--231. November, 2012.
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[Nav2012a] P. Navratil, B. Barth,, H. Childs. “Virtual Rheoscopic Fluids for Dense, Large- Scale Fluid Flow Visualizations.,” In Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV),, pp. 79-84. October, 2012.


[Nou2012a] B. Nouanesengsy, T.-Y. Lee, K. Lu, H.-W. Shen,, T. Peterka. “Parallel Particle Advection and FTLE Computation for Time-Varying Flow Fields,” SC 12: ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, 2012, 2012.


[Obe2012a] Harald Obermaier, Kenneth I. Joy. “Derived Metric Tensors for Flow Surface Visualization,” In IEEE Transactions on Visualization and Computer Graphics (TVCG), Vol. 18, No. 12, pp. 2149-2158. Oct, 2012.


[Obe2012b] Harald Obermaier, Kenneth I. Joy. “Function Field Analysis for the Visualization of Flow Similiarity in Time-Varying Vector Fields,” In LNCS 7432, Part II (Proc of ISVC 2012), Springer Heidelberg, pp. 253-264. 2012.


[Obe2012c] Harald Obermaier, Fang Chen, Hans Hagen, Kenneth I. Joy. “Visualization of Material Interface Stability,” In Proceedings of Pacific Visualization Conference, Songdo, Korea, pp. 225--232. 2012.


[Obe2012d] Harald Obermaier, Magali I. Billen, Kenneth I. Joy, Hans Hagen, Martin Hering-Bertram.. “Visualization and multivariate clustering of scattered moment tensors,” In Information Visualization, Vol. 11, No. 1, Sage, pp. 43-59. 2012.


[Oze2012a] Sedat Ozer, Jishang Wei, Deborah Silver, Kwan-Liu Ma,, Pino Martin. “Group Dynamics in Scientific Visualization,” Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV '12), pp. 97-104. October, 2012.


[Pas2012a] V. Pascucci, G. Scorzelli, B. Summa, P.-T. Bremer, A. Gyulassy, C. Christensen, S. Philip, S. Kumar. “The ViSUS Visualization Framework,” In High Performance Visualization: Enabling Extreme-Scale Scientific Insight, Chapman & Hall/CRC Computational Science, Ch. 19, Edited by E. Wes Bethel; Hank Childs, Lawrence Berkeley National Laboratory, Berkeley, California, USA; Charles Hansen, University of Utah, Salt Lake City, USA, Chapman & Hall/CRC Computational Science, 2012.


[Pat2012a] Md. Mostofa Ali Patwary, Diana Palsetia, Ankit Agrawal, Wei-keng Liao, Fredrik Manne, Alok Choudhary. “A New Scalable Parallel DBSCAN Algorithm Using the Disjoint Set Data Structure,” In ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Salt Lake City, Utah, U.S.A., 2012.


[Pet2012a] Tom Peterka, Robert Ross. “Versatile Communication Algorithms for Data Analysis,” In EuroMPI Special Session on Improving MPI User and Developer Interaction IMUDI'12, Vienna, Austria, 2012.


[Pet2012b] Peterka, T., Kwan, J., Pope, A., Finkel, H., Heitmann, K., Habib, S., Wang, J., Zagaris, G.. “Meshing the Universe: Integrating Analysis in Cosmological Simulations,” In Proceedings of the SC12 Ultrascale Visualization Workshop, Salt Lake City, UT, 2012.


[Pet2012c] Peterka, T., Ma, K.-L. “Parallel Image Compositing Methods, book chapter in High Performance Visualization,” Edited by Bethel, E. W., Childs, H., Hansen, C., 2012.


[Pot2012a] K. Potter, R.M. Kirby, D. Xiu, C.R. Johnson. “Interactive visualization of probability and cumulative density functions,” In International Journal of Uncertainty Quantification, Vol. 2, No. 4, pp. 397--412. 2012.
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[Pot2012b] K. Potter, P. Rosen, C.R. Johnson. “From Quantification to Visualization: A Taxonomy of Uncertainty Visualization Approaches,” In Uncertainty Quantification in Scientific Computing, IFIP Advances in Information and Communication Technology Series, Vol. 377, Edited by Andrew Dienstfrey and Ronald Boisvert, Springer, pp. 226--249. 2012.
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[Pou2012a] Elaheh Pourabbas, Arie Shoshani,, Kesheng Wu. “Minimizing Index Size by Reordering Rows and Columns,” In International Conference on Scientific and Statistical Database Management (SSDBM), June, 2012.


[Ras2012a] Michel Rasquin, Patrick Marion, Venkatram Vishwanath, Ray Loy, Andrew Bauer, Benjamin Matthews, Min Zhou, Onkar Sahni, Jing Fu, Ning Liu, Christopher Carothers, Mark S. Shephard, Mark Hereld, Michael E. Papka, Kalyan Kumaran, Berk Geveci,, Kenneth Jansen. “Interactive visualization from a live unstructured grid CFD simulation at 160k cores,” 2012 SIAM Conference on Parallel Processing for Scientific Computing. SIAM, 2012, 2012.


[Rec2012a] Shawn Recker, Mauricio Hess-Flores, Mark A. Duchaineau, Kenneth I. Joy. “Visualization of Scene Structure Uncertainity in a Multi-View Reconstruction Pipeline,” In Proceedings of Vision, Modeling and Visualization Conference, Note: to appear, 2012.


[Sal2012a] A. Sallaberry, C. Muelder,, K.-L. Ma. “Clustering, Visualizing, and Navigating for Large Dynamic Graphs,” Proceedings of Graph Drawing 2012, pp. 487-498. September 19-21,, 2012.


[San2012a] A.R. Sanderson, B. Whitlock, O. Ruebel, H. Childs, G.H. Weber, Prabhat, K. Wu. “A System for Query Based Analysis and Visualization,” In Proceedings of the Third International Eurovis Workshop on Visual Analytics EuroVA 2012, pp. 25--29. June, 2012.


[Sch2012a] E.R. Schendel, S.V. Pendse, J. Jenkins, D.A. Boyuka II, Z. Gong, S. Lakshminarasimhan, Q. Liu, S. Klasky, R. Ross, N.F. Samatova. “ISOBAR Hybrid Compression-I/O Interleaving for Large-scale Parallel I/O Optimization,” In 21st International ACM Symposium on High Performance Parallel and Distributed Computing, June, 2012.


[Sch2012b] E.R. Schendel, Y. Jin, N. Shah, J. Chen, C.S. Chang, S.-H. Ku, S. Ethier, S. Klasky, R. Latham, R. Ross, N. Samatova. “ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression,” In 28th annual IEEE International Conference on Data Engineering (ICDE), 2012.


[Sch2012c] Simon Schroeder, John A. Peterson, Harald Obermaier, Louise H. Kellogg, Kenneth I. Joy, Hans Hagen. “Visualization of Flow Behavior in Earth Mantle Convection,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, pp. 2198-2207. Oct, 2012.


[Sch2012d] M. Schott, T. Martin, A.V.P. Grosset, C. Brownlee, Thomas Hollt, B.P. Brown, S.T. Smith, C.D. Hansen. “Combined Surface and Volumetric Occlusion Shading,” In Proceedings of Pacific Vis 2012, pp. 169--176. 2012.
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[Sew2012a] Christopher Sewell, Jeremy Meredith, Kenneth Moreland, Tom Peterka, Dave DeMarle, Li-ta Lo, James Ahrens, Robert Maynard,, Berk Geveci. “The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures,” In 2012 SC Companion (Proceedings of the Workshop on Ultrascale Visualization), Salt Lake City, UT, pp. 206--214. November, 2012.
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[Sha2012a] Neil Shah, Eric R. Schendel, Sriram Lakshminarasimhan, Saurabh V. Pendse, Terry Rogers, Nagiza F. Samatova. “Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility,” In IEEE International Conference on Cluster Computing (Cluster), Beijing, China, September, 2012.


[She2012a] Zeqian Shen, Jishang Wei, Neel Sundaresan,, Kwan-Liu Ma. “Visual Analysis of Massive Web Session Data,” Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV), pp. 65-72. October, 2012.


[Sum2012a] Brian Summa, Julien Tierny, Valerio Pascucci. “Panorama weaving: fast and flexible seam processing,” In ACM Trans. Graph, Vol. 31, No. 4, Note: ACM ID:2335434, pp. 83:1--83:11. July, 2012.
ISSN: 0730-0301
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[Tah2012a] Yuzuru Tanahashi, Kwan-Liu Ma. “Design Considerations for Optimizing Storyline Visualizations,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, Note: (Also an InfoVis 2012 Conference paper), pp. 2679-2688. 2012.


[Tan2012a] Wei Tang, Narayan Desai, Venkatram Vishwanath, Daniel Buettner, Zhilin Lan. “Multi-domain job coscheduling for leadership computing systems,” The Journal of Supercomputing, Springer, 2012.
ISSN: 0920-8542, 2012
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[Tan2012b] Y. Tananhashi, K.-L. Ma. “Design Considerations for Optimizing Storyline Visualizations,” IEEE Transactions on Visualization and Computer Graphics 18(12):2679-2688 (InfoVis), 2012.


[Tan2012c] Yuzuru Tanahashi, James R. Rowland, Stephen North, Kwan-Liu Ma. “Inferring Human Mobility Patterns from Anonymized Mobile Communication Usage,” Proceedings of MoMM 2012, pp. 151-160. December 3-5, 2012.


[Tia2012a] Y. Tian, S. Klasky, W. Yu, H. Abbasi, B. Wang, N. Podhorszki, R. Grout, M. Wolf. “A System-Aware Optimized Data Organization for Efficient Scientific Analytics,” In 20th IEEE International Symposium on Modelling, Analysis, and Simulation of Computer and Telecommunication Systems (Mascots), 2012.


[Tia2012b] Y. Tian, S. Klasky, W. Yu, H. Abbasi, B. Wang, N. Podhorszki, R. Grout, M. Wolf. “Two-Level Data Organization for Efficient Scientific Analytics,” In 21st International ACM Symposium on High-Performance Parallel and Distributed Computing (HPDC), 2012.


[Ton2012a] Xin Tong, Teng-Yok Lee, Han-Wei Shen. “ Salient Time Steps Selection from Large Scale Time-Varying Data Sets with Dynamic Time Warping,” In IEEE 2012 Large Data Analysis and Visualization , IEEE, 2012.


[Ush2012a] Daniela M. Ushizima, Dmitriy Morozov, Gunther H. Weber, Andrea G. C. Bianchi, James A. Sethian, E. Wes Bethel, Member. “Augmented Topological Descriptors of Pore Networks for Material Science,” In IEEE Transactions on Visualization and Computer Graphcis, Vol. 18, No. 12, pp. 2041-2050. 2012.


[Vat2012a] Ranga Raju Vatsavai. “Scalable Multi-Instance Learning Approach for Mapping the Slums of the World,” Proceedings of the SC workshop on Petascale Data Analytics: Challenges and Opportunities, IEEE, 2012.


[Vat2012b] Ranga Raju Vatsavai, Auroop Ganguly, Varun Chandola, Anthony Stefanidis, Scott Klasky, Shashi Shekhar. “Spatiotemporal data mining in the era of big spatial data: algorithms and applications,” Proceedings of the 1st ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSaptial12), ACM, 2012.


[Vat2012c] Ranga Raju Vatsavai, Budhendra Bhaduri. “Big Spatiotemporal Data Analytics: Recent Advances and Future Challenges. (white paper) ,” CRA/CCC/NSF Sponsored: From GPS and Virtual Globes to Spatial Computing-2020, 2012.


[Wan2012a] Y. Wan, H. Otsuna, C.-B. Chien, C.D. Hansen. “FluoRender: An Application of 2D Image Space Methods for 3D and 4D Confocal Microscopy Data Visualization in Neurobiology Research,” In Proceedings of Pacific Vis 2012, Incheon, Korea, pp. 201--208. 2012.
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[Wan2012b] Y. Wan, H. Otsuna, C.-B. Chien, C.D. Hansen. “Interactive Extraction of Neural Structures with User-Guided Morphological Diffusion,” In Proceedings of the IEEE Symposium on Biological Data Visualization, pp. 1--8. 2012.
DOI: 10.1109/BioVis.2012.6378577


[Wan2012c] Y. Wan, A.K. Lewis, M. Colasanto, M. van Langeveld, G. Kardon, C.D. Hansen. “A Practical Workflow for Making Anatomical Atlases in Biological Research,” In IEEE Computer Graphics and Applications, Vol. 32, No. 5, pp. 70--80. 2012.
DOI: 10.1109/MCG.2012.64


[Web2012a] Gunther H. Weber, Hank Childs, Jeremy S. Meredith. “Efficient Parallel Extraction of Crack-free Isosurfaces from Adaptive Mesh Refinement (AMR) Data,” In Proceedings of the IEEE Symposium on Large-Scale Data Anaysis and Visualization, Seattle WA, USA, 2012.


[Wei2012a] J. Wei, Z. Shen, N. Sundaresan,, K-L. Ma. “Visual Cluster Exploration of Web Clickstream Data,” In Proceedings of the Visual Analytics Science and Technology Conference (VAST 2012), pp. 3-12. October, 2012.


[Wei2012b] J. Wei, H. Yu, R. W. Grout, J. Chen,, K.-L. Ma. “Visual Analysis of Particle Behaviors to Understand Combustion Simulations,” IEEE Computer Graphics and Applications, 32(1):12-19, 2012.


[Wid2012a] W. Widanagamaachchi, C. Christensen, P.-T. Bremer, V. Pascucci. “Interactive Exploration of Large-scale Time-varying Data using Dynamic Tracking Graphs,” In 2012 IEEE Symposium on Large Data Analysis and Visualization (LDAV), Note: Best Paper Award, pp. 9--17. 2012.
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[Won2012a] P.C. Wong, H.-W. Shen, C.R. Johnson, C. Chen, R.B. Ross. “The Top 10 Challenges in Extreme-Scale Visual Analytics,” In IEEE Computer Graphics and Applications, Visualization Viewpoints, Edited by Theresa-Marie Rhyne, pp. 63--67. July-August, 2012.
DOI: 10.1109/MCG.2012.87


[Won2012b] Pak Chung Wong, Han-Wei Shen, Valerio Pascucci. “Extreme Scale Visual Analytics,” In IEEE Computer Graphics and Applications, IEEE, July, 2012.


[Wu2012a] Yingcai Wu, Guo-Xun Yuan, Kwan-Liu Ma. “Visualizing Flow of Uncertainty through Analytical Processes,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 12, Note: (Also an InfoVis 2012 Conference paper), pp. 2526-2535. 2012.


[Yua2012a] Guo-Xun Yuan, Kwan-Liu Ma. “Scalable Traning of Sparse Linear SVM,” In Proceedings of IEEE ICDM 2012, Note: (Accepted for publication), December, 2012.


[Zha2012a] F. Zhang, C. Docan, M. Parashar, S. Klasky, N. Podhorszki, H. Abbasi. “Enabling In-situ Execution of Coupled Scientific Workflow on Multi-core Platform,” In 26th IEEE International Parallel & Distributed Processing Symposium (IPDPS), May, 2012.


[Zha2012b] F. Zhang, S. Lasluisa, T. Jin, I. Rodero, H. Bui, M. Parashar. “In-situ Feature-based Objects Tracking for Large-Scale Scientific Simulations,” In 1st International Workshop on Data-Intensive Scalable Computing Systems (DISCS), November, 2012.


[Zhe2012a] Lin Zheng, Yingcai Wu, Kwan-Liu Ma. “Perceptually Based Depth-Ordering Enhancement for Direct Volume Rendering,” In IEEE Transactions on Visualization and Computer Graphics, Note: (Accepted for publication), 2012.
ISSN: 1077-2626
DOI: http://dx.doi.org/10.1109/TVCG.2012.144


[Zho2012a] L. Zhou, M. Schott, C.D. Hansen. “Transfer Function Combinations,” In Computers and Graphics, Vol. 36, No. 6, pp. 596--606. 2012.
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